Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003748.1

Orthogroup ID

OG0031167

Physical Location & Seq

Genomic Coordinates Reverse (-)

74430 .. 75596

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003748.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ctgaaacctgcagctgcaagggcccttaatgaggggcatgaaaagcaagaaacaaggcctctcagacagaggctgttggttgtggctaacaggttacccgtctctgctattaggagaggtgaagattcatggtctttggagataagtgctgggggtctggtcactgcccttttgggtgtaaaggagtttgaggcaaggtggattggatgggcaggggtaaatgtgccagatgatattggacagagggcacttactaaagctctagctgaaaagctgcagaagtgtatccccgtcttccttgatgaggagattgttcatcaatattacaatggctattgcaacaatattttgtggccccttttccgttaccttgggcttccacaagaagatcgacttgctaccaatcggagtttccagtcgcaggtttctgcatataagaaggcaaatcaaatgtttgcagatgtagttactgagcactatgaagagggtgatgttgtttggtgccatgactaccatcttatgtttcttccaaaatgcttgaaggaatataacaacaaaatgaaagtcggctggtttcttcacactccctttccttcctctgaaattcataggacactgccatcacgatcagagctcctgcgctcagttcttgcagctgatttagttgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

223

Amino Acids

25.46

Weight (kDa)

7.85

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031167)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001889.1_g000039 Rmu_sc0003748.1_g000024

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	16, 412
AccB1I	GGYRCC	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	31, 304, 421
AgsI	TTSAA	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	6 cut(s)	14, 260, 266, 274, 634, 656
AluI	AGCT	6 cut(s)	14, 260, 266, 274, 634, 656
Alw21I	GWGCWC	2 cut(s)	477, 636
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	3 cut(s)	21, 56, 353
ApaI	GGGCCC	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	11, 14, 274, 653
ApoI	RAATTY	1 cut(s)	603
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	21, 22, 354
AsuHPI	GGTGA	2 cut(s)	131, 500
BaeGI	GKGCMC	2 cut(s)	25, 250
BanI	GGYRCC	1 cut(s)	501
BanII	GRGCYC	2 cut(s)	25, 636
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	477, 636
BbvI	GCAGC	3 cut(s)	23, 261, 665
BccI	CCATC	3 cut(s)	201, 522, 628
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	9, 275
BfuAI	ACCTGC	2 cut(s)	16, 412
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	4 cut(s)	12, 15, 275, 654
BlsI	GCNGC	4 cut(s)	13, 16, 276, 655
BmgT120I	GGNCC	3 cut(s)	21, 22, 354
BmiI	GGNNCC	3 cut(s)	23, 356, 503
BpiI	GAAGAC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 304, 421
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	31, 304, 421
BseMII	CTCAG	3 cut(s)	76, 462, 657
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	2 cut(s)	25, 250
BseXI	GCAGC	3 cut(s)	23, 261, 665
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	3 cut(s)	23, 58, 355
BshNI	GGYRCC	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	477, 636
BslI	CCNNNNNNNGG	3 cut(s)	31, 304, 421
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	23, 58, 355
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	4 cut(s)	25, 250, 477, 636
Bsp143I	GATC	2 cut(s)	388, 626
BspANI	GGCC	3 cut(s)	23, 58, 355
BspCNI	CTCAG	3 cut(s)	75, 463, 656
BspLI	GGNNCC	3 cut(s)	23, 356, 503
BspMAI	CTGCAG	2 cut(s)	13, 279
BspMI	ACCTGC	2 cut(s)	16, 412
BspT107I	GGYRCC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	388, 626
BssT1I	CCWWGG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	62, 471, 643
BstEII	GGTNACC	1 cut(s)	93
BstENI	CCTNNNNNAGG	2 cut(s)	29, 302
BstF5I	GGATG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	2 cut(s)	391, 629
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	388, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 43
BstPI	GGTNACC	1 cut(s)	93
BstSFI	CTRYAG	2 cut(s)	9, 275
BstSLI	GKGCMC	2 cut(s)	25, 250
BstV1I	GCAGC	3 cut(s)	23, 261, 665
BstV2I	GAAGAC	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	3 cut(s)	23, 58, 355
BtsCI	GGATG	1 cut(s)	212
BtsI	GCAGTG	2 cut(s)	162, 614
BtsIMutI	CAGTG	2 cut(s)	162, 614
BveI	ACCTGC	2 cut(s)	16, 412
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	21, 22, 354
CviAII	CATG	3 cut(s)	38, 129, 506
DdeI	CTNAG	3 cut(s)	62, 471, 643
DpnI	GATC	2 cut(s)	390, 628
DpnII	GATC	2 cut(s)	388, 626
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	25, 636
Eco53kI	GAGCTC	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	2 cut(s)	29, 302
EcoO109I	RGGNCCY	2 cut(s)	21, 22
EcoO65I	GGTNACC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	25, 636
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	41, 132, 509
FaiI	YATR	9 cut(s)	39, 130, 433, 435, 480, 507, 521, 549, 609
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	3 cut(s)	37, 128, 505
Fnu4HI	GCNGC	4 cut(s)	12, 15, 275, 654
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	2 cut(s)	25, 636
Fsp4HI	GCNGC	4 cut(s)	12, 15, 275, 654
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	4 cut(s)	12, 15, 275, 654
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	23, 58, 355
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	41, 132, 509
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	2 cut(s)	131, 500
Hpy188I	TCNGA	4 cut(s)	65, 408, 601, 631
Hpy188III	TCNNGA	1 cut(s)	624
HpyAV	CCTTC	3 cut(s)	433, 535, 603
HpyCH4V	TGCA	7 cut(s)	11, 17, 277, 339, 431, 458, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 43
HpyF3I	CTNAG	3 cut(s)	62, 471, 643
Hsp92II	CATG	3 cut(s)	41, 132, 509
HspAI	GCGC	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	388, 626
LmnI	GCTCC	1 cut(s)	639
Lsp1109I	GCAGC	3 cut(s)	23, 261, 665
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	4 cut(s)	93, 160, 365, 466
MalI	GATC	2 cut(s)	390, 628
MboI	GATC	2 cut(s)	388, 626
MboII	GAAGA	6 cut(s)	134, 286, 398, 494, 518, 569
MhlI	GDGCHC	4 cut(s)	25, 250, 477, 636
MluCI	AATT	1 cut(s)	603
MnlI	CCTC	9 cut(s)	25, 63, 69, 110, 184, 237, 298, 478, 607
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	14, 656
MwoI	GCNNNNNNNGC	2 cut(s)	20, 43
NdeII	GATC	2 cut(s)	388, 626
NlaIII	CATG	3 cut(s)	41, 132, 509
NlaIV	GGNNCC	3 cut(s)	23, 356, 503
NmuCI	GTSAC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	13, 16, 276, 655
Psp124BI	GAGCTC	1 cut(s)	636
PspEI	GGTNACC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	23, 356, 503
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	21, 22, 354
PstI	CTGCAG	2 cut(s)	13, 279
PstNI	CAGNNNCTG	1 cut(s)	73
PvuII	CAGCTG	2 cut(s)	14, 656
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	12, 15, 275, 654
Sau3AI	GATC	2 cut(s)	388, 626
Sau96I	GGNCC	3 cut(s)	21, 22, 354
SduI	GDGCHC	4 cut(s)	25, 250, 477, 636
SfcI	CTRYAG	2 cut(s)	9, 275
Sse9I	AATT	1 cut(s)	603
SseBI	AGGCCT	1 cut(s)	58
SspI	AATATT	2 cut(s)	323, 346
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	636
StuI	AGGCCT	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	1 cut(s)	391
TasI	AATT	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	169, 621
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	11, 14, 274, 653
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	54, 117, 305, 495, 575, 596
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	169, 621
XagI	CCTNNNNNAGG	2 cut(s)	29, 302
XapI	RAATTY	1 cut(s)	603
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.