Rmu_sc0001926.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001926.1
OG0031169
Physical Location & Seq
Reverse (-)
61356 .. 64398
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001926.1_g000015.1.cds

Sequence Viewer

Length: 822 bp
atggatcccacgttggccaatgttgccacgtgtctacttatctcgaggttttccttcctttgtagggcgcggactgggcgcgggggcgctggggaggaggctggccgggctgggtttgcaggcatcctggagggctgctgggttgcggtaggctggcagggacgtgcagcaggagcagcgcggtggcggattgggcaggggcgctgcggcagatttctgggctgcagtaggaggccggtgtgtggaggagcaggacgtgctgggctgcgagctggtgtgcagtgcgggctgcagggaggcgcaggagggctgcaggcgggctggcagcagctggacaggggacgtacgcgtgtgtgggctgctgcggggagctggcaagaagcgtggcaggaggctagggcggcagaggaggctgcaagctttgctgcagtgaggctgcttgcggcaggaggctgcttaggttgggtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggcacctaacccggatcgtgtgttcgtgcgaacacctacaaagcatgctcaagcagttatcttgatgcgactccatattgacaaggcactcagattggagtatatgccgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcatccctgacttgaaggttcaatggaacaatctccgctttgctaatttcaagtctattgctgaatataattcaaaagctcttcgcctacagtccatgttgaggttttgtggacaacttgtcacagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

273

Amino Acids

29.64

Weight (kDa)

9.87

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031169)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001926.1_g000015 Rmu_sc0010961.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 34
AccII CGCG 4 cut(s) 70, 81, 181, 349
AclWI GGATC 2 cut(s) 12, 540
AcoI YGGCCR 2 cut(s) 15, 103
AcvI CACGTG 1 cut(s) 30
AfaI GTAC 1 cut(s) 346
AfeI AGCGCT 2 cut(s) 657, 668
AfiI CCNNNNNNNGG 3 cut(s) 64, 242, 792
AflIII ACRYGT 2 cut(s) 29, 347
AgsI TTSAA 5 cut(s) 495, 706, 713, 742, 765
AhdI GACNNNNNGTC 1 cut(s) 809
AjiI CACGTC 2 cut(s) 164, 257
AjnI CCWGG 2 cut(s) 126, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
AluBI AGCT 6 cut(s) 272, 331, 372, 420, 646, 770
AluI AGCT 6 cut(s) 272, 331, 372, 420, 646, 770
AlwI GGATC 2 cut(s) 12, 540
AlwNI CAGNNNCTG 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 43
Aor51HI AGCGCT 2 cut(s) 657, 668
AoxI GGCC 3 cut(s) 15, 103, 233
AspLEI GCGC 8 cut(s) 70, 81, 89, 181, 204, 302, 658, 669
AsuC2I CCSGG 2 cut(s) 107, 530
AvaI CYCGRG 1 cut(s) 43
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 520
BbrPI CACGTG 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 128, 518
BcnI CCSGG 2 cut(s) 107, 530
BfaI CTAG 2 cut(s) 396, 659
BfmI CTRYAG 5 cut(s) 223, 290, 311, 426, 779
BfoI RGCGCY 4 cut(s) 90, 205, 659, 670
Bme1390I CCNGG 4 cut(s) 107, 128, 518, 530
BmeRI GACNNNNNGTC 1 cut(s) 809
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 2 cut(s) 164, 257
BmiI GGNNCC 2 cut(s) 6, 522
BmrFI CCNGG 4 cut(s) 107, 128, 518, 530
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 132, 573, 625
BmuI ACTGGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 457
BpuEI CTTGAG 1 cut(s) 552
BpuMI CCSGG 2 cut(s) 107, 530
BsaAI YACGTR 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 242, 792
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 2 cut(s) 128, 518
BseGI GGATG 3 cut(s) 123, 640, 693
BseLI CCNNNNNNNGG 3 cut(s) 64, 242, 792
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 1 cut(s) 622
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 3 cut(s) 110, 261, 422
BseYI CCCAGC 4 cut(s) 89, 110, 138, 260
BsgI GTGCAG 2 cut(s) 186, 299
Bsh1236I CGCG 4 cut(s) 70, 81, 181, 349
BshFI GGCC 3 cut(s) 17, 105, 235
BshNI GGYRCC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 3 cut(s) 106, 236, 530
BsiWI CGTACG 1 cut(s) 344
BslFI GGGAC 2 cut(s) 174, 354
BslI CCNNNNNNNGG 3 cut(s) 64, 242, 792
BsmFI GGGAC 2 cut(s) 174, 354
BsnI GGCC 3 cut(s) 17, 105, 235
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 3 cut(s) 4, 532, 627
BspANI GGCC 3 cut(s) 17, 105, 235
BspCNI CTCAG 1 cut(s) 621
BspFNI CGCG 4 cut(s) 70, 81, 181, 349
BspLI GGNNCC 2 cut(s) 6, 522
BspMAI CTGCAG 4 cut(s) 227, 294, 315, 430
BspPI GGATC 2 cut(s) 12, 540
BspQI GCTCTTC 2 cut(s) 657, 777
BspT107I GGYRCC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 235
BssMI GATC 3 cut(s) 4, 532, 627
Bst2UI CCWGG 2 cut(s) 128, 518
Bst4CI ACNGT 1 cut(s) 783
Bst6I CTCTTC 2 cut(s) 657, 777
BstAPI GCANNNNNTGC 2 cut(s) 257, 422
BstBAI YACGTR 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 457, 608
BstEII GGTNACC 1 cut(s) 466
BstF5I GGATG 3 cut(s) 123, 640, 693
BstFNI CGCG 4 cut(s) 70, 81, 181, 349
BstH2I RGCGCY 4 cut(s) 90, 205, 659, 670
BstHHI GCGC 8 cut(s) 70, 81, 89, 181, 204, 302, 658, 669
BstKTI GATC 3 cut(s) 7, 535, 630
BstMBI GATC 3 cut(s) 4, 532, 627
BstNI CCWGG 2 cut(s) 128, 518
BstNSI RCATGY 1 cut(s) 566
BstPI GGTNACC 1 cut(s) 466
BstSCI CCNGG 4 cut(s) 105, 126, 516, 528
BstSFI CTRYAG 5 cut(s) 223, 290, 311, 426, 779
BstUI CGCG 4 cut(s) 70, 81, 181, 349
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 17, 105, 235
BtrI CACGTC 2 cut(s) 164, 257
BtsCI GGATG 3 cut(s) 123, 640, 693
BtsI GCAGTG 2 cut(s) 287, 435
BtsIMutI CAGTG 2 cut(s) 287, 435
CaiI CAGNNNCTG 1 cut(s) 331
CfoI GCGC 8 cut(s) 70, 81, 89, 181, 204, 302, 658, 669
Cfr10I RCCGGY 1 cut(s) 235
Csp6I GTAC 1 cut(s) 345
CspCI CAANNNNNGTGG 2 cut(s) 365, 400
CviAII CATG 2 cut(s) 563, 787
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 457, 608
DpnI GATC 3 cut(s) 6, 534, 629
DpnII GATC 3 cut(s) 4, 532, 627
DriI GACNNNNNGTC 1 cut(s) 809
EaeI YGGCCR 2 cut(s) 15, 103
Eam1104I CTCTTC 2 cut(s) 657, 777
Eam1105I GACNNNNNGTC 1 cut(s) 809
EarI CTCTTC 2 cut(s) 657, 777
EciI GGCGGA 1 cut(s) 202
Eco47III AGCGCT 2 cut(s) 657, 668
Eco72I CACGTG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 466
EcoO65I GGTNACC 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 126, 516
FaeI CATG 2 cut(s) 566, 790
FaiI YATR 8 cut(s) 512, 564, 594, 621, 623, 649, 759, 788
FaqI GGGAC 2 cut(s) 174, 354
FatI CATG 2 cut(s) 562, 786
FauI CCCGC 4 cut(s) 74, 278, 310, 358
FblI GTMKAC 1 cut(s) 34
FokI GGATG 3 cut(s) 110, 647, 680
FspBI CTAG 2 cut(s) 396, 659
GlaI GCGC 8 cut(s) 69, 80, 88, 180, 203, 301, 657, 668
GsaI CCCAGC 4 cut(s) 93, 114, 142, 264
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 4 cut(s) 90, 205, 659, 670
HaeIII GGCC 3 cut(s) 17, 105, 235
HapII CCGG 3 cut(s) 106, 236, 530
HhaI GCGC 8 cut(s) 70, 81, 89, 181, 204, 302, 658, 669
Hin1II CATG 2 cut(s) 566, 790
Hin6I GCGC 8 cut(s) 68, 79, 87, 179, 202, 300, 656, 667
HinP1I GCGC 8 cut(s) 68, 79, 87, 179, 202, 300, 656, 667
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 2 cut(s) 588, 686
HpaII CCGG 3 cut(s) 106, 236, 530
Hpy166II GTNNAC 2 cut(s) 35, 803
Hpy188I TCNGA 1 cut(s) 611
Hpy188III TCNNGA 2 cut(s) 43, 580
Hpy8I GTNNAC 2 cut(s) 35, 803
HpyAV CCTTC 2 cut(s) 64, 700
HpyCH4III ACNGT 1 cut(s) 783
HpyCH4IV ACGT 5 cut(s) 11, 29, 163, 256, 343
HpyCH4V TGCA 9 cut(s) 119, 167, 225, 280, 292, 313, 416, 428, 638
HpyF3I CTNAG 2 cut(s) 457, 608
HpySE526I ACGT 5 cut(s) 11, 29, 163, 256, 343
Hsp92II CATG 2 cut(s) 566, 790
HspAI GCGC 8 cut(s) 68, 79, 87, 179, 202, 300, 656, 667
Kzo9I GATC 3 cut(s) 4, 532, 627
LguI GCTCTTC 2 cut(s) 657, 777
LmnI GCTCC 3 cut(s) 173, 248, 369
LweI GCATC 3 cut(s) 132, 573, 625
MaeI CTAG 2 cut(s) 396, 659
MaeII ACGT 5 cut(s) 11, 29, 163, 256, 343
MaeIII GTNAC 2 cut(s) 466, 811
MalI GATC 3 cut(s) 6, 534, 629
MboI GATC 3 cut(s) 4, 532, 627
MboII GAAGA 2 cut(s) 674, 764
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 2 cut(s) 736, 760
MluI ACGCGT 1 cut(s) 347
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 582
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 3 cut(s) 106, 236, 530
MspR9I CCNGG 4 cut(s) 107, 128, 518, 530
MvaI CCWGG 2 cut(s) 128, 518
MvnI CGCG 4 cut(s) 70, 81, 181, 349
NciI CCSGG 2 cut(s) 107, 530
NdeII GATC 3 cut(s) 4, 532, 627
NlaIII CATG 2 cut(s) 566, 790
NlaIV GGNNCC 2 cut(s) 6, 522
NmuCI GTSAC 1 cut(s) 811
NspI RCATGY 1 cut(s) 566
PaeI GCATGC 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 43
PciSI GCTCTTC 2 cut(s) 657, 777
PfeI GAWTC 1 cut(s) 686
Pfl23II CGTACG 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 126
PleI GAGTC 1 cut(s) 582
PmaCI CACGTG 1 cut(s) 30
PmlI CACGTG 1 cut(s) 30
PpsI GAGTC 1 cut(s) 582
Ppu21I YACGTR 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 126, 516
PspCI CACGTG 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 466
PspFI CCCAGC 4 cut(s) 89, 110, 138, 260
PspGI CCWGG 2 cut(s) 126, 516
PspLI CGTACG 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 6, 522
PstI CTGCAG 4 cut(s) 227, 294, 315, 430
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SapI GCTCTTC 2 cut(s) 657, 777
Sau3AI GATC 3 cut(s) 4, 532, 627
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 4 cut(s) 107, 128, 518, 530
SfaNI GCATC 3 cut(s) 132, 573, 625
SfcI CTRYAG 5 cut(s) 223, 290, 311, 426, 779
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 43, 567
SmoI CTYRAG 2 cut(s) 43, 567
SphI GCATGC 1 cut(s) 566
Sse9I AATT 2 cut(s) 736, 760
SspI AATATT 1 cut(s) 504
SspMI CTAG 2 cut(s) 396, 659
StyD4I CCNGG 4 cut(s) 105, 126, 516, 528
TaaI ACNGT 1 cut(s) 783
TaiI ACGT 5 cut(s) 14, 32, 166, 259, 346
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 736, 760
TauI GCSGC 3 cut(s) 210, 404, 446
TfiI GAWTC 1 cut(s) 686
TscAI CASTG 2 cut(s) 287, 435
TseFI GTSAC 1 cut(s) 811
Tsp45I GTSAC 1 cut(s) 811
TspRI CASTG 2 cut(s) 287, 435
XceI RCATGY 1 cut(s) 566
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 2 cut(s) 396, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.