Rmu_sc0010961.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010961.1
OG0031169
Physical Location & Seq
Reverse (-)
1701 .. 2102
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010961.1_g000002.1.cds

Sequence Viewer

Length: 402 bp
atgcttgactcaacaggctcggattaccatagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacctataatccaggcacctaacccggatcttgtgttcatccgaacatctacaaagcatgctcaagcagttatcttgatgcgacgccatgtggacaaggcactcagattagagtatatgtcgatcaaggatgcaagagagctatgggtagctctagcagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgttgacttcaagtctgttgctgaatataattcagaggctcttcgcttacaatccatgttgagattctgtggacaggggtatcaaacaggatcaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

6.9

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031169)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001926.1_g000015 Rmu_sc0010961.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 2 cut(s) 111, 400
AcyI GRCGYC 1 cut(s) 160
AfeI AGCGCT 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 4 cut(s) 66, 277, 284, 313
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 87
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 217, 227
AluI AGCT 2 cut(s) 217, 227
AlwI GGATC 2 cut(s) 111, 400
Aor51HI AGCGCT 1 cut(s) 239
AspLEI GCGC 2 cut(s) 240, 300
AsuC2I CCSGG 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 365, 398
BanI GGYRCC 1 cut(s) 91
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 89, 101
BmeRI GACNNNNNGTC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 2 cut(s) 144, 196
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 114, 211
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 34
Bsp143I GATC 3 cut(s) 103, 198, 392
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 111, 400
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 3 cut(s) 103, 198, 392
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 2 cut(s) 114, 211
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 240, 300
BstKTI GATC 3 cut(s) 106, 201, 395
BstMBI GATC 3 cut(s) 103, 198, 392
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 87, 99
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 2 cut(s) 114, 211
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 2 cut(s) 240, 300
CseI GACGC 1 cut(s) 168
CviAII CATG 3 cut(s) 134, 164, 358
CviJI RGCY 4 cut(s) 18, 217, 227, 341
CviKI_1 RGCY 4 cut(s) 18, 217, 227, 341
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 105, 200, 394
DpnII GATC 3 cut(s) 103, 198, 392
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 348
Eco47III AGCGCT 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 137, 167, 361
FaiI YATR 9 cut(s) 30, 83, 135, 165, 192, 194, 220, 330, 359
FatI CATG 3 cut(s) 133, 163, 357
FokI GGATG 2 cut(s) 101, 218
FspBI CTAG 1 cut(s) 230
GlaI GCGC 2 cut(s) 239, 299
HaeII RGCGCY 1 cut(s) 241
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 2 cut(s) 240, 300
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 3 cut(s) 137, 167, 361
Hin6I GCGC 2 cut(s) 238, 298
HinP1I GCGC 2 cut(s) 238, 298
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 8, 257, 366
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 3 cut(s) 169, 307, 374
Hpy188I TCNGA 4 cut(s) 22, 119, 182, 337
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 3 cut(s) 169, 307, 374
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 137, 167, 361
HspAI GCGC 2 cut(s) 238, 298
Kzo9I GATC 3 cut(s) 103, 198, 392
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 6 cut(s) 74, 101, 114, 282, 362, 375
LweI GCATC 2 cut(s) 144, 196
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 105, 200, 394
MboI GATC 3 cut(s) 103, 198, 392
MboII GAAGA 1 cut(s) 335
MflI RGATCY 1 cut(s) 103
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 272, 275, 331
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
MvaI CCWGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 103, 198, 392
NlaIII CATG 3 cut(s) 137, 167, 361
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 257, 366
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 348
Sau3AI GATC 3 cut(s) 103, 198, 392
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SetI ASST 6 cut(s) 82, 97, 219, 229, 282, 401
SfaNI GCATC 2 cut(s) 144, 196
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 1 cut(s) 331
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 87, 99
TaqI TCGA 1 cut(s) 197
TasI AATT 1 cut(s) 331
TfiI GAWTC 2 cut(s) 257, 366
TspDTI ATGAA 1 cut(s) 103
XceI RCATGY 1 cut(s) 137
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.