Rmu_sc0001942.1_g000005

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001942.1
OG0025523
Physical Location & Seq
Forward (+)
30095 .. 31465
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atggcggcatcgttattgcttcgccgcagagtttcatctgccggcgtttctcgcactctccaaggtctagtgggtggtatggagcccttttgtctacacttagaattgaagattggagctttggtgagtttttctgataaaacaaggcagtacagcagctccagtggcaccatgagcttcgattttctagacttgacttctcctcatacatggtatccaaaagctcgaagtaagcctcgcaaggttatcttgcacatgggtcccacaaatagtggtaaaacgcacaatgctttaaagcgactcgaatcaagtccatctggcatatactgtggtcctctcagattgttggcctgggaggttgcaaaacggttgaacaaggcaaaagtgccatgtgatttacttacaggacaagagagagaggaagttgatggtgcaaaacacatggctgtgacagttgagatggctgatgtaacctccaactaccattgcgccgttattgatgaaattcaggcaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

172

Amino Acids

18.83

Weight (kDa)

9.27

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEXQc_Suv3 PF22527 68 - 170 3.3e-45 DEXQ-box helicase domain of Suv3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025523)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7969448.1_g000001 Rmu_sc0001942.1_g000005
rosa_samantha Rh4BG009100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 94
AciI CCGC 2 cut(s) 5, 25
AcsI RAATTY 1 cut(s) 504
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 109, 373
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 4 cut(s) 119, 159, 177, 224
AluI AGCT 4 cut(s) 119, 159, 177, 224
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 504
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 260, 332
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 2 cut(s) 260, 332
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 168
BccI CCATC 3 cut(s) 322, 422, 454
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 225
BfaI CTAG 2 cut(s) 68, 188
BfuAI ACCTGC 1 cut(s) 503
BfuI GTATCC 1 cut(s) 225
BisI GCNGC 3 cut(s) 6, 25, 157
BlsI GCNGC 3 cut(s) 7, 26, 158
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 2 cut(s) 260, 332
BmgT120I GGNCC 2 cut(s) 260, 332
BmiI GGNNCC 4 cut(s) 84, 169, 261, 262
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 61, 351
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 143, 173
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 61, 351
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 2 cut(s) 5, 25
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 4 cut(s) 84, 169, 261, 262
BspMI ACCTGC 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 61, 351
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 329, 369, 454
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 100, 338
BstHHI GCGC 1 cut(s) 491
BstMWI GCNNNNNNNGC 3 cut(s) 51, 165, 174
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 168
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 260, 332
Csp6I GTAC 1 cut(s) 151
CviAII CATG 5 cut(s) 172, 210, 256, 390, 442
CviJI RGCY 9 cut(s) 85, 119, 159, 177, 224, 235, 350, 446, 464
CviKI_1 RGCY 9 cut(s) 85, 119, 159, 177, 224, 235, 350, 446, 464
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 100, 338
DraI TTTAAA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 260, 332
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 5 cut(s) 175, 213, 259, 393, 445
FaiI YATR 9 cut(s) 80, 173, 207, 211, 257, 323, 325, 391, 443
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 246
FatI CATG 5 cut(s) 171, 209, 255, 389, 441
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 6, 25, 157
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 6, 25, 157
FspBI CTAG 2 cut(s) 68, 188
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 6, 25, 157
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 491
Hin1II CATG 5 cut(s) 175, 213, 259, 393, 445
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 2 cut(s) 300, 305
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 136, 341
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 95
HpyCH4III ACNGT 3 cut(s) 329, 369, 454
HpyCH4V TGCA 3 cut(s) 253, 362, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 165, 174
HpyF3I CTNAG 2 cut(s) 100, 338
Hsp92II CATG 5 cut(s) 175, 213, 259, 393, 445
HspAI GCGC 1 cut(s) 489
KflI GGGWCCC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 3 cut(s) 82, 116, 164
LpnPI CCDG 8 cut(s) 55, 175, 303, 337, 364, 390, 494, 498
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 17
MaeI CTAG 2 cut(s) 68, 188
MaeIII GTNAC 2 cut(s) 448, 469
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 104, 504
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 6 cut(s) 213, 246, 345, 349, 412, 484
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 2 cut(s) 293, 517
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 3 cut(s) 51, 165, 174
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 5 cut(s) 175, 213, 259, 393, 445
NlaIV GGNNCC 4 cut(s) 84, 169, 261, 262
NmuCI GTSAC 1 cut(s) 448
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 7, 26, 158
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 4 cut(s) 84, 169, 261, 262
PspPI GGNCC 2 cut(s) 260, 332
PspPPI RGGWCCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 2 cut(s) 293, 517
SatI GCNGC 3 cut(s) 6, 25, 157
Sau96I GGNCC 2 cut(s) 260, 332
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 87
SetI ASST 9 cut(s) 67, 121, 161, 179, 226, 246, 360, 476, 517
SfaNI GCATC 1 cut(s) 17
SinI GGWCC 2 cut(s) 260, 332
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 2 cut(s) 104, 504
SsiI CCGC 2 cut(s) 5, 25
SspMI CTAG 2 cut(s) 68, 188
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 3 cut(s) 329, 369, 454
TaqI TCGA 3 cut(s) 180, 226, 303
TasI AATT 2 cut(s) 104, 504
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 8, 27
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 293, 517
Tru9I TTAA 2 cut(s) 293, 517
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 24, 516
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 260, 332
XapI RAATTY 1 cut(s) 504
XbaI TCTAGA 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 94
XspI CTAG 2 cut(s) 68, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.