Rmu_sc0001942.1_g000007

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001942.1
OG0031173
Physical Location & Seq
Forward (+)
38633 .. 45466
6834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001942.1_g000007.1.cds

Sequence Viewer

Length: 927 bp
atgttcaatgacgcaagcagtgagttggatgttctagtagcaagtgatgccatcgggatgggtctgaatctaaacatttcacgaatcatattttcaacaatgacaaaatttgatggtattgagaaccgggaactctctgtaccagagatcaaacaaattgcaggaagagctggcaggtatggatcaaggtttcctgttggtgaagtgacttgtttagatgcagctgatctgcctcttcttcattcatcactaaaatccccatctccgactcttgagagggctggattatttcctacctttgatcttatgtatatgtattcacgttcccacccaaatagaggcctctaccagatactggagcattttgtagagaatgcaacattgtcagacaattatttcattgctgattgcgaagaagtaatggagcattttgtagagaatgcaacattgtcagacaattatttcattgctgattgcgaagaagtaatgaaagttgctgctctgattgatgagttgcctctcgggttgcatgataagtaccttttctgtataagcccagttgacttgagtgatgacatttcatcccagggtcttacacagtttgctcaaaattatgcaaaaaggggcattgtgccacttcgagaaatatttacaccagggacacttcagataccaaaaacaccaggtgcacttaaagagcttgaatccattcacaaggtattggatctgtatgtttggttgagtttccgattagaggagtcattcccagaccgtgagctcgcatctacacagaagtccatctgccacctgttgatcgaagagtttctagagagatttggtttgcaaaagcagatgcccaaggccaagagattagcttcaaatactaccttaacttacctattgtcccaaaagaacagaccctactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

308

Amino Acids

34.77

Weight (kDa)

5.03

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031173)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001942.1_g000007
rosa_samantha Rh4BG009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 355
AclWI GGATC 2 cut(s) 190, 732
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 650
AdeI CACNNNGTG 1 cut(s) 686
AfaI GTAC 2 cut(s) 141, 539
AfiI CCNNNNNNNGG 3 cut(s) 338, 355, 754
AgsI TTSAA 4 cut(s) 7, 96, 704, 879
AjnI CCWGG 3 cut(s) 585, 655, 682
AluBI AGCT 5 cut(s) 170, 224, 700, 778, 875
AluI AGCT 5 cut(s) 170, 224, 700, 778, 875
Alw21I GWGCWC 2 cut(s) 691, 780
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 2 cut(s) 190, 732
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 2 cut(s) 340, 861
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 2 cut(s) 221, 497
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 2 cut(s) 708, 822
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 691
BanII GRGCYC 1 cut(s) 780
Bbv12I GWGCWC 2 cut(s) 691, 780
BbvI GCAGC 2 cut(s) 233, 484
BccI CCATC 5 cut(s) 52, 59, 107, 268, 806
BciT130I CCWGG 3 cut(s) 587, 657, 684
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 3 cut(s) 35, 827, 925
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 222, 498
BlsI GCNGC 2 cut(s) 223, 499
Bme1390I CCNGG 4 cut(s) 128, 587, 657, 684
BmeT110I CYCGRG 1 cut(s) 521
BmrFI CCNGG 4 cut(s) 128, 587, 657, 684
BmrI ACTGGG 1 cut(s) 551
BmsI GCATC 4 cut(s) 37, 208, 791, 843
BmuI ACTGGG 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 2 cut(s) 293, 586
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 585, 586, 656, 858
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 355, 754
Bse1I ACTGG 2 cut(s) 360, 557
Bse3DI GCAATG 2 cut(s) 399, 465
BseBI CCWGG 3 cut(s) 587, 657, 684
BseDI CCNNGG 4 cut(s) 585, 586, 656, 858
BseGI GGATG 3 cut(s) 34, 63, 581
BseLI CCNNNNNNNGG 3 cut(s) 338, 355, 754
BseMI GCAATG 2 cut(s) 399, 465
BseNI ACTGG 2 cut(s) 360, 557
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 2 cut(s) 233, 484
BshFI GGCC 2 cut(s) 342, 863
BsiHKAI GWGCWC 2 cut(s) 691, 780
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 2 cut(s) 673, 889
BslI CCNNNNNNNGG 3 cut(s) 338, 355, 754
BsmFI GGGAC 2 cut(s) 673, 889
BsmI GAATGC 2 cut(s) 379, 445
BsnI GGCC 2 cut(s) 342, 863
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 691, 780
Bsp143I GATC 6 cut(s) 147, 182, 226, 301, 724, 813
BspANI GGCC 2 cut(s) 342, 863
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 190, 732
BspQI GCTCTTC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 399, 465
BsrI ACTGG 2 cut(s) 360, 557
BssECI CCNNGG 4 cut(s) 585, 586, 656, 858
BssMI GATC 6 cut(s) 147, 182, 226, 301, 724, 813
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 3 cut(s) 587, 657, 684
Bst4CI ACNGT 2 cut(s) 600, 773
Bst6I CTCTTC 3 cut(s) 160, 240, 813
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 16, 172, 780
BstF5I GGATG 3 cut(s) 34, 63, 581
BstKTI GATC 6 cut(s) 150, 185, 229, 304, 727, 816
BstMBI GATC 6 cut(s) 147, 182, 226, 301, 724, 813
BstMWI GCNNNNNNNGC 2 cut(s) 47, 167
BstNI CCWGG 3 cut(s) 587, 657, 684
BstSCI CCNGG 4 cut(s) 126, 585, 655, 682
BstSLI GKGCMC 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 233, 484
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 724
BsuRI GGCC 2 cut(s) 342, 863
BtsCI GGATG 3 cut(s) 34, 63, 581
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 16, 172, 780
CaiI CAGNNNCTG 1 cut(s) 355
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 682
Csp6I GTAC 2 cut(s) 140, 538
CviAII CATG 1 cut(s) 530
CviJI RGCY 9 cut(s) 170, 224, 281, 342, 555, 700, 778, 863, 875
CviKI_1 RGCY 9 cut(s) 170, 224, 281, 342, 555, 700, 778, 863, 875
CviQI GTAC 2 cut(s) 140, 538
DpnI GATC 6 cut(s) 149, 184, 228, 303, 726, 815
DpnII GATC 6 cut(s) 147, 182, 226, 301, 724, 813
DraIII CACNNNGTG 1 cut(s) 686
Eam1104I CTCTTC 3 cut(s) 160, 240, 813
EarI CTCTTC 3 cut(s) 160, 240, 813
Ecl136II GAGCTC 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 858
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 778
EcoRII CCWGG 3 cut(s) 585, 655, 682
EcoT14I CCWWGG 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 1 cut(s) 533
FaiI YATR 9 cut(s) 89, 180, 308, 312, 314, 531, 551, 615, 732
FaqI GGGAC 2 cut(s) 673, 889
FatI CATG 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 222, 498
FokI GGATG 3 cut(s) 41, 70, 568
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 2 cut(s) 222, 498
FspBI CTAG 3 cut(s) 35, 827, 925
GluI GCNGC 2 cut(s) 222, 498
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 342, 863
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 533
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 5 cut(s) 67, 84, 268, 704, 758
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 562, 689
Hpy188I TCNGA 7 cut(s) 66, 267, 388, 454, 504, 669, 749
Hpy188III TCNNGA 5 cut(s) 55, 81, 272, 641, 827
Hpy8I GTNNAC 2 cut(s) 562, 689
HpyCH4III ACNGT 2 cut(s) 600, 773
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 8 cut(s) 161, 221, 377, 443, 529, 617, 689, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 167
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 533
Kzo9I GATC 6 cut(s) 147, 182, 226, 301, 724, 813
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 358, 424
Lsp1109I GCAGC 2 cut(s) 233, 484
LweI GCATC 4 cut(s) 37, 208, 791, 843
MabI ACCWGGT 1 cut(s) 682
MaeI CTAG 3 cut(s) 35, 827, 925
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 205
MalI GATC 6 cut(s) 149, 184, 228, 303, 726, 815
MboI GATC 6 cut(s) 147, 182, 226, 301, 724, 813
MboII GAAGA 6 cut(s) 177, 227, 230, 425, 491, 830
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 691, 780
MluCI AATT 5 cut(s) 107, 156, 391, 457, 610
MlyI GAGTC 2 cut(s) 262, 767
MmeI TCCRAC 2 cut(s) 6, 290
MnlI CCTC 6 cut(s) 243, 270, 332, 353, 528, 748
MroXI GAANNNNTTC 2 cut(s) 708, 822
MseI TTAA 2 cut(s) 693, 890
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 4 cut(s) 128, 587, 657, 684
Mva1269I GAATGC 2 cut(s) 379, 445
MvaI CCWGG 3 cut(s) 587, 657, 684
MwoI GCNNNNNNNGC 2 cut(s) 47, 167
NciI CCSGG 1 cut(s) 128
NdeII GATC 6 cut(s) 147, 182, 226, 301, 724, 813
NlaIII CATG 1 cut(s) 533
NmuCI GTSAC 1 cut(s) 205
PasI CCCWGGG 1 cut(s) 586
PceI AGGCCT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 160
PctI GAATGC 2 cut(s) 379, 445
PdmI GAANNNNTTC 2 cut(s) 708, 822
PfeI GAWTC 3 cut(s) 67, 84, 704
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 2 cut(s) 223, 499
PleI GAGTC 2 cut(s) 262, 766
PpsI GAGTC 2 cut(s) 262, 766
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 3 cut(s) 585, 655, 682
PspGI CCWGG 3 cut(s) 585, 655, 682
PsrI GAACNNNNNNTAC 3 cut(s) 123, 155, 905
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 141, 539
RsaNI GTAC 2 cut(s) 140, 538
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 780
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 693, 890
SatI GCNGC 2 cut(s) 222, 498
Sau3AI GATC 6 cut(s) 147, 182, 226, 301, 724, 813
SchI GAGTC 2 cut(s) 262, 767
ScrFI CCNGG 4 cut(s) 128, 587, 657, 684
SduI GDGCHC 2 cut(s) 691, 780
SexAI ACCWGGT 1 cut(s) 682
SfaNI GCATC 4 cut(s) 37, 208, 791, 843
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 272, 565
SmoI CTYRAG 2 cut(s) 272, 565
Sse9I AATT 5 cut(s) 107, 156, 391, 457, 610
SseBI AGGCCT 1 cut(s) 342
SspI AATATT 1 cut(s) 648
SspMI CTAG 3 cut(s) 35, 827, 925
SstI GAGCTC 1 cut(s) 780
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 4 cut(s) 126, 585, 655, 682
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 2 cut(s) 600, 773
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 640, 816
TasI AATT 5 cut(s) 107, 156, 391, 457, 610
TfiI GAWTC 3 cut(s) 67, 84, 704
Tru1I TTAA 2 cut(s) 693, 890
Tru9I TTAA 2 cut(s) 693, 890
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 221, 497
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 6 cut(s) 230, 234, 388, 454, 503, 570
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 687
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 826
XmnI GAANNNNTTC 2 cut(s) 708, 822
XspI CTAG 3 cut(s) 35, 827, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.