Rh4BG009200

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0031173
Physical Location & Seq
Forward (+)
1262752 .. 1265605
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG009200.1

Sequence Viewer

Length: 861 bp
ATGTTCAATGATGCAAGCAGTGAGTTGGATGTTCTAGTAGCAAGTGACGCCATCGGGATGGGTCTGAATCTGAACATTTCACGAATCATATTTTCAACAATGACAAAATTTGATGGTATTGAGAACCGGGAACTCTCTGTACCGGAGATCAAACAAATTGCAGGAAGAGCTGGCAGGTATGGATCAAGGTTTCCTGTTGGTGAAGTGACTTGTTTAGATGCAGCTGATCTGCCTCTTCTTCATTCATCACTAAAATCCCCATCTCCGACTCTTGAGAGGGCTGGATTATTTCCTACCTTTGATCTTATGTATATGTATTCACGTTCCCACCCAAATAGAGGCCTCTACCAGATACTGGAGCATTTTGTAGAGAATGCAACATTGTCAGACAATTATTTCATTGCTGATTGCGAAGAAGTAATGAAAGTTGCTGCTCTGATTGATGAGTTGCCTCTCAGGTTGCATGATAAGTACCTTTTCTGTATAAGCCCAGTTGACTTGAGTGATGACATTTCATCCCAGGGTCTTACACAGTTTACTCAAAATTATGCAAAAAGGGGCATTGTGCCACTTCGAGAAATATTTACACCAGGGACACTTCAGATACCAAAAACACCAGGTGCACTCAAAGAGCTTGAATCCATTCACAAGGTATTGGATCTGTATGTTTGGTTGAGTTTCCGATTAGAGGAGTCATTCCCAGACCGTGAGCTCGCATCTACACAGAAGTCCATCTGCCACCTGTTGATCGAAGAGTTTCTAGAGAGATTTGGTTTGCAAAAGCAGATGCCCAAGGCCAAGAGATTAGCTTCAAATACTACCTTAACTTACCTATTGTCCCAAAAGAACAGACCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

286

Amino Acids

32.34

Weight (kDa)

5.59

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 6 - 61 6.5e-06 Helicase conserved C-terminal domain
Suv3_C_1 PF18147 143 - 184 1e-08 Suv3 C-terminal domain 1
SUV3_C PF12513 209 - 256 1.2e-15 ATP-dependent RNA helicase SUV3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031173)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001942.1_g000007
rosa_samantha Rh4BG009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 355
AclWI GGATC 2 cut(s) 190, 666
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 2 cut(s) 141, 473
AfiI CCNNNNNNNGG 3 cut(s) 338, 355, 688
AgsI TTSAA 4 cut(s) 7, 96, 638, 813
AjnI CCWGG 3 cut(s) 519, 589, 616
AluBI AGCT 5 cut(s) 170, 224, 634, 712, 809
AluI AGCT 5 cut(s) 170, 224, 634, 712, 809
Alw21I GWGCWC 2 cut(s) 625, 714
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 2 cut(s) 190, 666
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 2 cut(s) 340, 795
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 2 cut(s) 221, 431
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 2 cut(s) 642, 756
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 625, 714
BbvI GCAGC 2 cut(s) 233, 418
BccI CCATC 5 cut(s) 52, 59, 107, 268, 740
BciT130I CCWGG 3 cut(s) 521, 591, 618
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 3 cut(s) 35, 761, 859
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 222, 432
BlsI GCNGC 2 cut(s) 223, 433
Bme1390I CCNGG 4 cut(s) 128, 521, 591, 618
BmrFI CCNGG 4 cut(s) 128, 521, 591, 618
BmrI ACTGGG 1 cut(s) 485
BmsI GCATC 3 cut(s) 208, 725, 777
BmuI ACTGGG 1 cut(s) 485
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 2 cut(s) 293, 520
BpuMI CCSGG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 519, 520, 590, 792
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 355, 688
Bse1I ACTGG 2 cut(s) 360, 491
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 3 cut(s) 521, 591, 618
BseDI CCNNGG 4 cut(s) 519, 520, 590, 792
BseGI GGATG 3 cut(s) 34, 63, 515
BseLI CCNNNNNNNGG 3 cut(s) 338, 355, 688
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 2 cut(s) 360, 491
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 2 cut(s) 233, 418
BshFI GGCC 2 cut(s) 342, 797
BsiHKAI GWGCWC 2 cut(s) 625, 714
BsiSI CCGG 2 cut(s) 127, 143
BslFI GGGAC 2 cut(s) 607, 823
BslI CCNNNNNNNGG 3 cut(s) 338, 355, 688
BsmFI GGGAC 2 cut(s) 607, 823
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 342, 797
Bsp1286I GDGCHC 2 cut(s) 625, 714
Bsp143I GATC 6 cut(s) 147, 182, 226, 301, 658, 747
BspANI GGCC 2 cut(s) 342, 797
BspCNI CTCAG 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 190, 666
BspQI GCTCTTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 2 cut(s) 360, 491
BssECI CCNNGG 4 cut(s) 519, 520, 590, 792
BssMI GATC 6 cut(s) 147, 182, 226, 301, 658, 747
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 3 cut(s) 521, 591, 618
Bst4CI ACNGT 2 cut(s) 534, 707
Bst6I CTCTTC 3 cut(s) 160, 240, 747
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 16, 172, 714
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 3 cut(s) 34, 63, 515
BstKTI GATC 6 cut(s) 150, 185, 229, 304, 661, 750
BstMBI GATC 6 cut(s) 147, 182, 226, 301, 658, 747
BstMWI GCNNNNNNNGC 2 cut(s) 47, 167
BstNI CCWGG 3 cut(s) 521, 591, 618
BstSCI CCNGG 4 cut(s) 126, 519, 589, 616
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 2 cut(s) 233, 418
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 2 cut(s) 342, 797
BtsCI GGATG 3 cut(s) 34, 63, 515
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 16, 172, 714
CaiI CAGNNNCTG 1 cut(s) 355
CseI GACGC 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 2 cut(s) 140, 472
CviAII CATG 1 cut(s) 464
CviJI RGCY 9 cut(s) 170, 224, 281, 342, 489, 634, 712, 797, 809
CviKI_1 RGCY 9 cut(s) 170, 224, 281, 342, 489, 634, 712, 797, 809
CviQI GTAC 2 cut(s) 140, 472
DdeI CTNAG 1 cut(s) 455
DpnI GATC 6 cut(s) 149, 184, 228, 303, 660, 749
DpnII GATC 6 cut(s) 147, 182, 226, 301, 658, 747
DraIII CACNNNGTG 1 cut(s) 620
Eam1104I CTCTTC 3 cut(s) 160, 240, 747
EarI CTCTTC 3 cut(s) 160, 240, 747
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 714
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 712
EcoRII CCWGG 3 cut(s) 519, 589, 616
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 1 cut(s) 467
FaiI YATR 9 cut(s) 89, 180, 308, 312, 314, 465, 485, 549, 666
FaqI GGGAC 2 cut(s) 607, 823
FatI CATG 1 cut(s) 463
Fnu4HI GCNGC 2 cut(s) 222, 432
FokI GGATG 3 cut(s) 41, 70, 502
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 2 cut(s) 222, 432
FspBI CTAG 3 cut(s) 35, 761, 859
GluI GCNGC 2 cut(s) 222, 432
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 342, 797
HapII CCGG 2 cut(s) 127, 143
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 467
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 5 cut(s) 67, 84, 268, 638, 692
HpaII CCGG 2 cut(s) 127, 143
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 496, 537, 623
Hpy188I TCNGA 7 cut(s) 66, 72, 267, 388, 438, 603, 683
Hpy188III TCNNGA 5 cut(s) 55, 81, 272, 575, 761
Hpy8I GTNNAC 3 cut(s) 496, 537, 623
HpyCH4III ACNGT 2 cut(s) 534, 707
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 8 cut(s) 14, 161, 221, 377, 463, 551, 623, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 167
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 467
Kzo9I GATC 6 cut(s) 147, 182, 226, 301, 658, 747
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 233, 418
LweI GCATC 3 cut(s) 208, 725, 777
MabI ACCWGGT 1 cut(s) 616
MaeI CTAG 3 cut(s) 35, 761, 859
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 44, 205
MalI GATC 6 cut(s) 149, 184, 228, 303, 660, 749
MboI GATC 6 cut(s) 147, 182, 226, 301, 658, 747
MboII GAAGA 5 cut(s) 177, 227, 230, 425, 764
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 625, 714
MluCI AATT 4 cut(s) 107, 156, 391, 544
MlyI GAGTC 2 cut(s) 262, 701
MmeI TCCRAC 2 cut(s) 6, 290
MnlI CCTC 6 cut(s) 243, 270, 332, 353, 462, 682
MroXI GAANNNNTTC 2 cut(s) 642, 756
MseI TTAA 1 cut(s) 824
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 127, 143
MspR9I CCNGG 4 cut(s) 128, 521, 591, 618
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 3 cut(s) 521, 591, 618
MwoI GCNNNNNNNGC 2 cut(s) 47, 167
NciI CCSGG 1 cut(s) 128
NdeII GATC 6 cut(s) 147, 182, 226, 301, 658, 747
NlaIII CATG 1 cut(s) 467
NmuCI GTSAC 2 cut(s) 44, 205
PasI CCCWGGG 1 cut(s) 520
PceI AGGCCT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 160
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 2 cut(s) 642, 756
PfeI GAWTC 3 cut(s) 67, 84, 638
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 2 cut(s) 223, 433
PleI GAGTC 2 cut(s) 262, 700
PpsI GAGTC 2 cut(s) 262, 700
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 519, 589, 616
PspGI CCWGG 3 cut(s) 519, 589, 616
PsrI GAACNNNNNNTAC 3 cut(s) 123, 155, 839
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 141, 473
RsaNI GTAC 2 cut(s) 140, 472
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 714
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 824
SatI GCNGC 2 cut(s) 222, 432
Sau3AI GATC 6 cut(s) 147, 182, 226, 301, 658, 747
SchI GAGTC 2 cut(s) 262, 701
ScrFI CCNGG 4 cut(s) 128, 521, 591, 618
SduI GDGCHC 2 cut(s) 625, 714
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 3 cut(s) 208, 725, 777
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 272, 499
SmoI CTYRAG 2 cut(s) 272, 499
Sse9I AATT 4 cut(s) 107, 156, 391, 544
SseBI AGGCCT 1 cut(s) 342
SspI AATATT 1 cut(s) 582
SspMI CTAG 3 cut(s) 35, 761, 859
SstI GAGCTC 1 cut(s) 714
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 4 cut(s) 126, 519, 589, 616
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 2 cut(s) 534, 707
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 574, 750
TasI AATT 4 cut(s) 107, 156, 391, 544
TfiI GAWTC 3 cut(s) 67, 84, 638
Tru1I TTAA 1 cut(s) 824
Tru9I TTAA 1 cut(s) 824
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 2 cut(s) 44, 205
TseI GCWGC 2 cut(s) 221, 431
Tsp45I GTSAC 2 cut(s) 44, 205
TspDTI ATGAA 5 cut(s) 230, 234, 388, 437, 504
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 621
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 760
XmnI GAANNNNTTC 2 cut(s) 642, 756
XspI CTAG 3 cut(s) 35, 761, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.