Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0024732

Physical Location & Seq

Genomic Coordinates Forward (+)

108065 .. 109203

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgaaagttgctgctctgattgatgagttgcctctcgggttgcatgataagtaccttttctgtataagcccagttgacttgagtgatgacatttcatcccagggtcttacacagtttgctcaaaattatgcaaaaaggggcattgtgccacttcgagaaatatttacaccagggacacttcagataccaaaaacaccaggtgcacttaaagagcttgaatccattcacaaggtattggatctgtatgtttggttgagtttccgattagaggagtcattcccagaccgtgagctcgcatctacacagaagtccatctgccacctgttgatcgaagagtttctagagagatttggtttgcaaaagcagatgcccaaggccaagagattagcttcaaatactaccttaacttacctattgtcccaaaagaacagaccctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SUV3_C

Protein Analysis

146

Amino Acids

16.68

Weight (kDa)

7.76

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322251
rosa_multiflora	Rmu_sc0001942.1_g000026
rosa_samantha	Rh1AG050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	218, 393
AjnI	CCWGG	3 cut(s)	99, 169, 196
AluBI	AGCT	3 cut(s)	214, 292, 389
AluI	AGCT	3 cut(s)	214, 292, 389
Alw21I	GWGCWC	2 cut(s)	205, 294
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	375
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	222, 336
AvaI	CYCGRG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	205, 294
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	3 cut(s)	101, 171, 198
BfaI	CTAG	2 cut(s)	341, 439
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	101, 171, 198
BmeT110I	CYCGRG	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	101, 171, 198
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	305, 357
BmuI	ACTGGG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	99, 100, 170, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	3 cut(s)	101, 171, 198
BseDI	CCNNGG	4 cut(s)	99, 100, 170, 372
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	377
BsiHKAI	GWGCWC	2 cut(s)	205, 294
BsiHKCI	CYCGRG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	187, 403
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	2 cut(s)	187, 403
BsnI	GGCC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	205, 294
Bsp143I	GATC	2 cut(s)	238, 327
BspANI	GGCC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	99, 100, 170, 372
BssMI	GATC	2 cut(s)	238, 327
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	101, 171, 198
Bst4CI	ACNGT	2 cut(s)	114, 287
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	241, 330
BstMBI	GATC	2 cut(s)	238, 327
BstNI	CCWGG	3 cut(s)	101, 171, 198
BstSCI	CCNGG	3 cut(s)	99, 169, 196
BstSLI	GKGCMC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	69, 214, 292, 377, 389
CviKI_1	RGCY	5 cut(s)	69, 214, 292, 377, 389
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	2 cut(s)	240, 329
DpnII	GATC	2 cut(s)	238, 327
DraIII	CACNNNGTG	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	99, 169, 196
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	47
FaiI	YATR	4 cut(s)	45, 65, 129, 246
FaqI	GGGAC	2 cut(s)	187, 403
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	341, 439
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	377
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	218, 272
Hpy166II	GTNNAC	2 cut(s)	76, 203
Hpy188I	TCNGA	3 cut(s)	18, 183, 263
Hpy188III	TCNNGA	2 cut(s)	155, 341
Hpy8I	GTNNAC	2 cut(s)	76, 203
HpyCH4III	ACNGT	2 cut(s)	114, 287
HpyCH4V	TGCA	4 cut(s)	43, 131, 203, 358
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	238, 327
LpnPI	CCDG	9 cut(s)	84, 86, 113, 156, 183, 183, 210, 294, 335
LweI	GCATC	2 cut(s)	305, 357
MabI	ACCWGGT	1 cut(s)	196
MaeI	CTAG	2 cut(s)	341, 439
MalI	GATC	2 cut(s)	240, 329
MboI	GATC	2 cut(s)	238, 327
MboII	GAAGA	1 cut(s)	344
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	205, 294
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	2 cut(s)	42, 262
MroXI	GAANNNNTTC	2 cut(s)	222, 336
MseI	TTAA	2 cut(s)	207, 404
MspR9I	CCNGG	3 cut(s)	101, 171, 198
MvaI	CCWGG	3 cut(s)	101, 171, 198
NdeII	GATC	2 cut(s)	238, 327
NlaIII	CATG	1 cut(s)	47
PasI	CCCWGGG	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	222, 336
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	99, 169, 196
PspGI	CCWGG	3 cut(s)	99, 169, 196
PsrI	GAACNNNNNNTAC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	207, 404
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	238, 327
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	101, 171, 198
SduI	GDGCHC	2 cut(s)	205, 294
SetI	ASST	9 cut(s)	57, 202, 216, 234, 294, 324, 391, 404, 414
SexAI	ACCWGGT	1 cut(s)	196
SfaNI	GCATC	2 cut(s)	305, 357
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	124
SspI	AATATT	1 cut(s)	162
SspMI	CTAG	2 cut(s)	341, 439
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	99, 169, 196
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	114, 287
TaqI	TCGA	2 cut(s)	154, 330
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	207, 404
Tru9I	TTAA	2 cut(s)	207, 404
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	17, 84
VneI	GTGCAC	1 cut(s)	201
XbaI	TCTAGA	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	222, 336
XspI	CTAG	2 cut(s)	341, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.