Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0024732

Physical Location & Seq

Genomic Coordinates Reverse (-)

8444064 .. 8446058

Gene Structure 1995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG050300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTATATGTATTCACGTTCCCACCCAAATAGAGGCCTCTACCAGATACTGGAGCATTTTGTAGAGAATGCAACATTGTCAGACAATTATTTCATTGCTGATTGCGAAGAAATAATGAAAGTTGCTGCTCTGATTGATGAGTTGCCTCTTGGGTTGCATGATAAGTACCTTTTCTGTATAAGCCCAGTTGACTTGAGTGATGACATTTCATCCCAGGGTCTTACACAGTTTGCTCAAAATTATGCAAAAAGGGGCATTGTGCCACTTCGAGAAATATTTACACCAGGGACACTTCAGATACCAAAAACACCAGGTGCACTCAAAGAGCTTGAATCCATTCAAAAGGTATTGGATCTGTATGTTTGGTTGAGTTTCCGATTAGAGGAGTCATTCCCAGACCGTGAGCTTGCATCTTCACAGAAGTCCATCTGCCACCTGTTGATCAAAGAGTTTCTAGAGAGATTTGGTTTGCAAAAGCAGAGGCCCAAGGCCAAGAGATTAGCTTCAAATACTCCCAAAAGAACAGAGCCTACTTGTGAGATATTTATCATTTCTTCAACTTGTCTATTCCTTTCTTCTATGCTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SUV3_C

Protein Analysis

196

Amino Acids

22.44

Weight (kDa)

6.1

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suv3_C_1	PF18147	41 - 82	1.2e-10	Suv3 C-terminal domain 1
SUV3_C	PF12513	107 - 154	1.6e-13	ATP-dependent RNA helicase SUV3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322251
rosa_multiflora	Rmu_sc0001942.1_g000026
rosa_samantha	Rh1AG050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AclWI	GGATC	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	278
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	32, 49, 382
AgsI	TTSAA	4 cut(s)	332, 341, 507, 558
AjnI	CCWGG	3 cut(s)	213, 283, 310
AluBI	AGCT	3 cut(s)	328, 406, 503
AluI	AGCT	3 cut(s)	328, 406, 503
Alw21I	GWGCWC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	34, 482, 489
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	3 cut(s)	215, 285, 312
BclI	TGATCA	1 cut(s)	441
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	3 cut(s)	215, 285, 312
BmgT120I	GGNCC	1 cut(s)	483
BmrFI	CCNGG	3 cut(s)	215, 285, 312
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	545
BsaJI	CCNNGG	4 cut(s)	213, 214, 284, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 49, 382
Bse1I	ACTGG	2 cut(s)	54, 185
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	545
BseBI	CCWGG	3 cut(s)	215, 285, 312
BseDI	CCNNGG	4 cut(s)	213, 214, 284, 486
BseGI	GGATG	1 cut(s)	209
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	3 cut(s)	32, 49, 382
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	54, 185
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	3 cut(s)	36, 484, 491
BsiHKAI	GWGCWC	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	32, 49, 382
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	36, 484, 491
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	352, 441
BspANI	GGCC	3 cut(s)	36, 484, 491
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	54, 185
BssECI	CCNNGG	4 cut(s)	213, 214, 284, 486
BssMI	GATC	2 cut(s)	352, 441
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	3 cut(s)	215, 285, 312
Bst4CI	ACNGT	2 cut(s)	228, 401
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	209
BstKTI	GATC	2 cut(s)	355, 444
BstMBI	GATC	2 cut(s)	352, 441
BstNI	CCWGG	3 cut(s)	215, 285, 312
BstSCI	CCNGG	3 cut(s)	213, 283, 310
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	36, 484, 491
BtsCI	GGATG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	483
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	8 cut(s)	36, 183, 328, 406, 484, 491, 503, 529
CviKI_1	RGCY	8 cut(s)	36, 183, 328, 406, 484, 491, 503, 529
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	2 cut(s)	354, 443
DpnII	GATC	2 cut(s)	352, 441
DraIII	CACNNNGTG	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	3 cut(s)	213, 283, 310
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	1 cut(s)	161
FaiI	YATR	7 cut(s)	6, 8, 159, 179, 243, 360, 581
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	36, 484, 491
Hin1II	CATG	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	332, 386
Hpy166II	GTNNAC	2 cut(s)	190, 317
Hpy188I	TCNGA	4 cut(s)	82, 132, 297, 377
Hpy188III	TCNNGA	2 cut(s)	269, 455
Hpy8I	GTNNAC	2 cut(s)	190, 317
HpyCH4III	ACNGT	2 cut(s)	228, 401
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	71, 157, 245, 317, 410, 472
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	352, 441
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	419
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	16
MalI	GATC	2 cut(s)	354, 443
MboI	GATC	2 cut(s)	352, 441
MboII	GAAGA	4 cut(s)	119, 405, 546, 567
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	85, 238
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	5 cut(s)	26, 47, 156, 376, 474
MroXI	GAANNNNTTC	1 cut(s)	336
MspR9I	CCNGG	3 cut(s)	215, 285, 312
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	3 cut(s)	215, 285, 312
NdeII	GATC	2 cut(s)	352, 441
NlaIII	CATG	1 cut(s)	161
PasI	CCCWGGG	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	36
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	213, 283, 310
PspGI	CCWGG	3 cut(s)	213, 283, 310
PspPI	GGNCC	1 cut(s)	483
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	352, 441
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	215, 285, 312
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	19, 171, 316, 330, 348, 408, 438, 505
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	85, 238
SseBI	AGGCCT	1 cut(s)	36
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	455
StuI	AGGCCT	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	213, 283, 310
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	228, 401
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	268
TasI	AATT	2 cut(s)	85, 238
TfiI	GAWTC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	82, 131, 198
Van91I	CCANNNNNTGG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	315
XbaI	TCTAGA	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.