Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001972.1

Orthogroup ID

OG0020867

Physical Location & Seq

Genomic Coordinates Forward (+)

68545 .. 71290

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001972.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgctcctccagcccgattccgacaggaccgccttcatcttcttcaggtcctcttctccagtcgctcacctgcagcccatctccgaccggtctcagtttggtgaggttccggcaccgcagcgggatgggagcttcagatcggtggtagctttccacgaggagccaaaaaaagtcacactaatttcagaattaggggtatacgaaaccgtgttttacatggctgagtggagggtaactctgctgaccctacggagcctccaaaaagggactggaaccgctctacagatatctctttcggaacgagccttaaccgacgctgctgctgctactgggacatggtctaatcatgagggtagtattttatcatggtgtcggatcccaagtttttatggattccttctttgttaccggggtcgaccccaaagccataatgtctcaaaacgaggaggccataaagaaacgattttttattcctttgtctcgaacttcgtgaagaactccattctatctctcccttgttacgaagaaaaaagtggtggtgttgtacaccgccagttgtacactcccttcgttctacgaacccttgttgattctgaacttccttcgcgaaggaaccggacttttgacgggctagcccttttttatgcgccgctttaccctgaaaggaaaaagagttttgctcctctgggcgctaggcgctcccgtgcttcgcgagaaggaaaaaggattcatcctttgttacatctggcacgagatgataaagagagagcttcgtctatcgatgaacagcggattgacggagctcttggcattgctttgtttttctctcctttcctatcagcgagtcccgatccttttgttcgaaatttcttcgttcgtaccgaaccgcttgcagaatcaaatcctgtttcacaagatcctatatcagctatacatcctccttgcatttatgccggagatgtcgccagtgctatgggctttggcttatgtagatcaaaaatgatgaatgggattgtggcactccactcgccgccaatgcagaaggatgccgctgaagaatggaacgctgcttcgctctgctggatacgtcggatcccgtacaacaagcgagctttttaccctcaaattcaaacatgtgggcgaaaaatgctatcctgctctattgttgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0017004 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_C_asm

Protein Analysis

390

Amino Acids

43.72

Weight (kDa)

9.46

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020867)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0258021 RchiOBHm_MTg0498851
rosa_multiflora	Rmu_sc0001972.1_g000014
rosa_roxburghii	Rroxscaffold_2G00119330
rosa_samantha	Rh1BG017100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	2 cut(s)	198, 415
AccII	CGCG	2 cut(s)	607, 712
AclWI	GGATC	6 cut(s)	370, 383, 845, 911, 1087, 1100
AcsI	RAATTY	2 cut(s)	865, 1125
AcuI	CTGAAG	3 cut(s)	28, 118, 1074
AfaI	GTAC	4 cut(s)	546, 560, 880, 1100
AflIII	ACRYGT	1 cut(s)	1133
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	1130
AluBI	AGCT	6 cut(s)	132, 149, 770, 803, 929, 1112
AluI	AGCT	6 cut(s)	132, 149, 770, 803, 929, 1112
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	3 cut(s)	96, 439, 484
AlwI	GGATC	6 cut(s)	370, 383, 845, 911, 1087, 1100
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	6 cut(s)	73, 118, 317, 320, 323, 1067
ApoI	RAATTY	2 cut(s)	865, 1125
AsiGI	ACCGGT	1 cut(s)	87
AspLEI	GCGC	3 cut(s)	649, 692, 699
AspS9I	GGNCC	2 cut(s)	27, 48
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	59, 113
AsuII	TTCGAA	1 cut(s)	862
AsuNHI	GCTAGC	1 cut(s)	631
AvaII	GGWCC	2 cut(s)	27, 48
BamHI	GGATCC	2 cut(s)	375, 1092
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	805
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BauI	CACGAG	2 cut(s)	155, 750
Bbv12I	GWGCWC	1 cut(s)	805
BbvI	GCAGC	6 cut(s)	85, 130, 304, 307, 310, 1054
BccI	CCATC	2 cut(s)	86, 119
BcgI	CGANNNNNNTGC	6 cut(s)	302, 336, 872, 906, 1008, 1042
BciVI	GTATCC	1 cut(s)	1077
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	3 cut(s)	96, 439, 484
BfaI	CTAG	2 cut(s)	632, 693
BfmI	CTRYAG	2 cut(s)	71, 281
BfoI	RGCGCY	2 cut(s)	693, 700
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	1077
BisI	GCNGC	9 cut(s)	74, 119, 318, 321, 324, 650, 1031, 1050, 1068
BlsI	GCNGC	9 cut(s)	75, 120, 319, 322, 325, 651, 1032, 1051, 1069
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	2 cut(s)	27, 48
BmgT120I	GGNCC	2 cut(s)	27, 48
BmiI	GGNNCC	8 cut(s)	108, 114, 162, 254, 274, 377, 614, 1094
BmrFI	CCNGG	1 cut(s)	410
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	1036
BmtI	GCTAGC	1 cut(s)	635
BmuI	ACTGGG	1 cut(s)	339
BplI	GAGNNNNNCTC	4 cut(s)	220, 252, 664, 696
BpmI	CTGGAG	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	862
BpuMI	CCSGG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	2 cut(s)	87, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	5 cut(s)	59, 274, 334, 553, 966
Bse3DI	GCAATG	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	4 cut(s)	130, 730, 934, 1051
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	2 cut(s)	107, 213
BseNI	ACTGG	5 cut(s)	59, 274, 334, 553, 966
BseRI	GAGGAG	3 cut(s)	173, 459, 672
BseXI	GCAGC	6 cut(s)	85, 130, 304, 307, 310, 1054
Bsh1236I	CGCG	2 cut(s)	607, 712
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	112
BshTI	ACCGGT	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	805
BsiSI	CCGG	5 cut(s)	88, 110, 409, 616, 954
BslFI	GGGAC	3 cut(s)	280, 346, 831
BsmAI	GTCTC	3 cut(s)	96, 439, 484
BsmFI	GGGAC	3 cut(s)	280, 346, 831
BsnI	GGCC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	862
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp1407I	TGTACA	2 cut(s)	544, 558
Bsp143I	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
Bsp68I	TCGCGA	2 cut(s)	607, 712
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	106, 214
BspDI	ATCGAT	1 cut(s)	780
BspFNI	CGCG	2 cut(s)	607, 712
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	8 cut(s)	108, 114, 162, 254, 274, 377, 614, 1094
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	6 cut(s)	370, 383, 845, 911, 1087, 1100
BspT104I	TTCGAA	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	2 cut(s)	544, 558
BsrI	ACTGG	5 cut(s)	59, 274, 334, 553, 966
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
BssNAI	GTATAC	1 cut(s)	199
BssSI	CACGAG	2 cut(s)	155, 750
Bst1107I	GTATAC	1 cut(s)	199
Bst2BI	CACGAG	2 cut(s)	155, 750
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	58
BstAUI	TGTACA	2 cut(s)	544, 558
BstBI	TTCGAA	1 cut(s)	862
BstC8I	GCNNGC	3 cut(s)	633, 891, 1110
BstDEI	CTNAG	2 cut(s)	93, 222
BstF5I	GGATG	4 cut(s)	130, 730, 934, 1051
BstFNI	CGCG	2 cut(s)	607, 712
BstH2I	RGCGCY	2 cut(s)	693, 700
BstHHI	GCGC	3 cut(s)	649, 692, 699
BstKTI	GATC	6 cut(s)	140, 378, 853, 919, 995, 1095
BstMAI	GTCTC	3 cut(s)	96, 439, 484
BstMBI	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 323, 696, 1036, 1147
BstNSI	RCATGY	1 cut(s)	1137
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	2 cut(s)	71, 281
BstUI	CGCG	2 cut(s)	607, 712
BstV1I	GCAGC	6 cut(s)	85, 130, 304, 307, 310, 1054
BstX2I	RGATCY	3 cut(s)	375, 916, 1092
BstXI	CCANNNNNNTGG	1 cut(s)	973
BstYI	RGATCY	3 cut(s)	375, 916, 1092
BstZ17I	GTATAC	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	1077
BsuRI	GGCC	1 cut(s)	450
BsuTUI	ATCGAT	1 cut(s)	780
BtsCI	GGATG	4 cut(s)	130, 730, 934, 1051
BtsIMutI	CAGTG	1 cut(s)	973
BtuMI	TCGCGA	2 cut(s)	607, 712
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	633, 891, 1110
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	3 cut(s)	649, 692, 699
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	27, 48
ClaI	ATCGAT	1 cut(s)	780
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	4 cut(s)	545, 559, 879, 1099
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	5 cut(s)	217, 336, 347, 366, 1134
CviQI	GTAC	4 cut(s)	545, 559, 879, 1099
DdeI	CTNAG	2 cut(s)	93, 222
DpnI	GATC	6 cut(s)	139, 377, 852, 918, 994, 1094
DpnII	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	803
Eco24I	GRGCYC	1 cut(s)	805
Eco31I	GGTCTC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	27, 48
Eco53kI	GAGCTC	1 cut(s)	803
Eco57I	CTGAAG	3 cut(s)	28, 118, 1074
EcoICRI	GAGCTC	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	805
FaeI	CATG	5 cut(s)	220, 339, 350, 369, 1137
FaqI	GGGAC	3 cut(s)	280, 346, 831
FatI	CATG	5 cut(s)	216, 335, 346, 365, 1133
FauI	CCCGC	1 cut(s)	114
FblI	GTMKAC	2 cut(s)	198, 415
Fnu4HI	GCNGC	9 cut(s)	74, 119, 318, 321, 324, 650, 1031, 1050, 1068
FokI	GGATG	4 cut(s)	137, 717, 921, 1058
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	9 cut(s)	74, 119, 318, 321, 324, 650, 1031, 1050, 1068
FspBI	CTAG	2 cut(s)	632, 693
GlaI	GCGC	3 cut(s)	648, 691, 698
GluI	GCNGC	9 cut(s)	74, 119, 318, 321, 324, 650, 1031, 1050, 1068
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	2 cut(s)	693, 700
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	5 cut(s)	88, 110, 409, 616, 954
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	3 cut(s)	649, 692, 699
Hin1II	CATG	5 cut(s)	220, 339, 350, 369, 1137
Hin6I	GCGC	3 cut(s)	647, 690, 697
HinP1I	GCGC	3 cut(s)	647, 690, 697
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	6 cut(s)	17, 393, 590, 727, 844, 896
HpaII	CCGG	5 cut(s)	88, 110, 409, 616, 954
HphI	GGTGA	2 cut(s)	59, 113
Hpy166II	GTNNAC	4 cut(s)	199, 416, 547, 561
Hpy188I	TCNGA	8 cut(s)	22, 85, 137, 187, 298, 375, 595, 1092
Hpy188III	TCNNGA	6 cut(s)	347, 481, 490, 606, 711, 848
Hpy8I	GTNNAC	4 cut(s)	199, 416, 547, 561
Hpy99I	CGWCG	2 cut(s)	317, 1092
HpyAV	CCTTC	7 cut(s)	43, 407, 577, 603, 612, 710, 1036
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	1087
HpyCH4V	TGCA	4 cut(s)	73, 893, 945, 1039
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 323, 696, 1036, 1147
HpyF3I	CTNAG	2 cut(s)	93, 222
HpySE526I	ACGT	1 cut(s)	1087
Hsp92II	CATG	5 cut(s)	220, 339, 350, 369, 1137
HspAI	GCGC	3 cut(s)	647, 690, 697
Kzo9I	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
LmnI	GCTCC	7 cut(s)	9, 129, 160, 252, 685, 704, 800
Lsp1109I	GCAGC	6 cut(s)	85, 130, 304, 307, 310, 1054
LweI	GCATC	1 cut(s)	1036
MaeI	CTAG	2 cut(s)	632, 693
MaeII	ACGT	1 cut(s)	1087
MaeIII	GTNAC	5 cut(s)	172, 232, 404, 518, 738
MalI	GATC	6 cut(s)	139, 377, 852, 918, 994, 1094
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
MboII	GAAGA	7 cut(s)	31, 34, 45, 505, 536, 862, 1067
MflI	RGATCY	3 cut(s)	375, 916, 1092
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	4 cut(s)	180, 188, 865, 1125
MlyI	GAGTC	1 cut(s)	853
MmeI	TCCRAC	4 cut(s)	45, 108, 353, 1070
MseI	TTAA	1 cut(s)	308
MspA1I	CMGCKG	3 cut(s)	121, 790, 1052
MspI	CCGG	5 cut(s)	88, 110, 409, 616, 954
MspR9I	CCNGG	1 cut(s)	410
MvnI	CGCG	2 cut(s)	607, 712
MwoI	GCNNNNNNNGC	5 cut(s)	10, 323, 696, 1036, 1147
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	5 cut(s)	220, 339, 350, 369, 1137
NlaIV	GGNNCC	8 cut(s)	108, 114, 162, 254, 274, 377, 614, 1094
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	2 cut(s)	607, 712
NspI	RCATGY	1 cut(s)	1137
NspV	TTCGAA	1 cut(s)	862
PagI	TCATGA	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	78
PciI	ACATGT	1 cut(s)	1133
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PfeI	GAWTC	5 cut(s)	17, 393, 590, 727, 896
PflFI	GACNNNGTC	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	9 cut(s)	75, 120, 319, 322, 325, 651, 1032, 1051, 1069
PleI	GAGTC	1 cut(s)	852
PpsI	GAGTC	1 cut(s)	852
PpuMI	RGGWCCY	1 cut(s)	48
PscI	ACATGT	1 cut(s)	1133
Psp124BI	GAGCTC	1 cut(s)	805
Psp5II	RGGWCCY	1 cut(s)	48
PspN4I	GGNNCC	8 cut(s)	108, 114, 162, 254, 274, 377, 614, 1094
PspPI	GGNCC	2 cut(s)	27, 48
PspPPI	RGGWCCY	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	3 cut(s)	375, 916, 1092
PsyI	GACNNNGTC	1 cut(s)	337
RruI	TCGCGA	2 cut(s)	607, 712
RsaI	GTAC	4 cut(s)	546, 560, 880, 1100
RsaNI	GTAC	4 cut(s)	545, 559, 879, 1099
SacI	GAGCTC	1 cut(s)	805
SalI	GTCGAC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	9 cut(s)	74, 119, 318, 321, 324, 650, 1031, 1050, 1068
Sau3AI	GATC	6 cut(s)	137, 375, 850, 916, 992, 1092
Sau96I	GGNCC	2 cut(s)	27, 48
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	1 cut(s)	1036
SfcI	CTRYAG	2 cut(s)	71, 281
SfuI	TTCGAA	1 cut(s)	862
SinI	GGWCC	2 cut(s)	27, 48
Sse9I	AATT	4 cut(s)	180, 188, 865, 1125
SspMI	CTAG	2 cut(s)	632, 693
SstI	GAGCTC	1 cut(s)	805
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	1090
TaqI	TCGA	4 cut(s)	415, 482, 780, 862
TasI	AATT	4 cut(s)	180, 188, 865, 1125
TatI	WGTACW	2 cut(s)	544, 558
TauI	GCSGC	3 cut(s)	652, 1033, 1052
TfiI	GAWTC	5 cut(s)	17, 393, 590, 727, 896
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	973
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	6 cut(s)	73, 118, 317, 320, 323, 1067
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	25, 719, 798, 1019
TspGWI	ACGGA	2 cut(s)	265, 813
TspRI	CASTG	1 cut(s)	973
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	27, 48
XapI	RAATTY	2 cut(s)	865, 1125
XceI	RCATGY	1 cut(s)	1137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmiI	GTMKAC	2 cut(s)	198, 415
XspI	CTAG	2 cut(s)	632, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.