Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001986.1

Orthogroup ID

OG0022548

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2015

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 671 bp

gtaagtggcttgccagtagacagatacgttgcaactgggcaacaaaaggtgctggcaccaatgaggataagcagagttcagatgccaagagtgtggtggaactaacaaatggttcctcagaagacggaaaagaggcaactaacaatgaggctccggagaacaacccccaatataccactgtctacgttggcaatcttgctccagaggtcactcagcttgatcttcatcgtcactttcacactcttggtgttggagtaattgaagaagttcggcttcagcgtgataagggttttgggtttgtcaggttcaatacccatgctgaggcagctctggctatacagatgggaaattctcagtcgaatttgtgtggaagacaaataaagtgctcatggggcagcaagcctactccaccaggaacagtctcaaacccactccctcctcctgctgcagcagtgcctatcccgggcctctctgcaagcgacctcctgacctatgagcggcaactagcaatgagcaagatgggcggtgtccatgcccttatgcacccccagggacagatccctcttaagcagggggcaatgggaatgggcactgctggagcaagccaggctatatatgatggtggattccagaatgttgctgctgcccagcagctcatgtactaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

222

Amino Acids

23.76

Weight (kDa)

7.17

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	60 - 126	6.7e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022548)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09680
rosa_multiflora	Rmu_sc0001986.1_g000001 Rmu_sc0030037.1_g000001 Rmu_sc0040533.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	498
AccI	GTMKAC	2 cut(s)	18, 182
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	2 cut(s)	498, 524
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	348, 360
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	321, 463, 497
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	2 cut(s)	262, 309
AjnI	CCWGG	3 cut(s)	411, 548, 605
AluBI	AGCT	3 cut(s)	216, 328, 654
AluI	AGCT	3 cut(s)	216, 328, 654
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	462
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	7 cut(s)	325, 395, 445, 448, 640, 643, 651
ApoI	RAATTY	2 cut(s)	348, 360
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	463, 464
AvaI	CYCGRG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	128, 378
Bbv12I	GWGCWC	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	7 cut(s)	337, 407, 432, 460, 627, 630, 663
BccI	CCATC	3 cut(s)	336, 513, 613
BciT130I	CCWGG	3 cut(s)	413, 550, 607
BcnI	CCSGG	2 cut(s)	463, 464
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	505
BfmI	CTRYAG	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	565
BisI	GCNGC	8 cut(s)	326, 396, 446, 449, 499, 641, 644, 652
BlsI	GCNGC	8 cut(s)	327, 397, 447, 450, 500, 642, 645, 653
Bme1390I	CCNGG	5 cut(s)	413, 463, 464, 550, 607
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	3 cut(s)	57, 114, 152
BmrFI	CCNGG	5 cut(s)	413, 463, 464, 550, 607
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	2 cut(s)	128, 378
BpmI	CTGGAG	2 cut(s)	185, 617
Bpu10I	CCTNAGC	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	463, 464
BsaBI	GATNNNNATC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	462, 548, 549
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 463, 497
Bse1I	ACTGG	3 cut(s)	14, 40, 666
Bse3DI	GCAATG	2 cut(s)	515, 584
Bse8I	GATNNNNATC	1 cut(s)	224
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	413, 550, 607
BseDI	CCNNGG	3 cut(s)	462, 548, 549
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	3 cut(s)	321, 463, 497
BseMI	GCAATG	2 cut(s)	515, 584
BseMII	CTCAG	4 cut(s)	131, 226, 311, 367
BseNI	ACTGG	3 cut(s)	14, 40, 666
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	7 cut(s)	337, 407, 432, 460, 627, 630, 663
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	1 cut(s)	467
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	154, 463
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	321, 463, 497
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	388, 592
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	219, 557
BspACI	CCGC	2 cut(s)	498, 524
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	4 cut(s)	130, 225, 312, 366
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	57, 114, 152
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	55
BspTI	CTTAAG	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	515, 584
BsrI	ACTGG	3 cut(s)	14, 40, 666
BssECI	CCNNGG	3 cut(s)	462, 548, 549
BssMI	GATC	2 cut(s)	219, 557
Bst2UI	CCWGG	3 cut(s)	413, 550, 607
Bst4CI	ACNGT	2 cut(s)	180, 420
BstAFI	CTTAAG	1 cut(s)	565
BstC8I	GCNNGC	5 cut(s)	11, 54, 400, 477, 603
BstDEI	CTNAG	4 cut(s)	117, 212, 320, 353
BstKTI	GATC	2 cut(s)	222, 560
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	219, 557
BstMWI	GCNNNNNNNGC	5 cut(s)	325, 331, 392, 521, 607
BstNI	CCWGG	3 cut(s)	413, 550, 607
BstSCI	CCNGG	5 cut(s)	411, 461, 462, 548, 605
BstSFI	CTRYAG	1 cut(s)	446
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	7 cut(s)	337, 407, 432, 460, 627, 630, 663
BstV2I	GAAGAC	2 cut(s)	128, 378
BstX2I	RGATCY	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	467
BtsI	GCAGTG	2 cut(s)	458, 590
BtsIMutI	CAGTG	3 cut(s)	176, 458, 590
Cac8I	GCNNGC	5 cut(s)	11, 54, 400, 477, 603
Cfr13I	GGNCC	1 cut(s)	465
Cfr9I	CCCGGG	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	4 cut(s)	316, 389, 532, 657
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	4 cut(s)	117, 212, 320, 353
DpnI	GATC	2 cut(s)	221, 559
DpnII	GATC	2 cut(s)	219, 557
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	462
EcoRII	CCWGG	3 cut(s)	411, 548, 605
FaeI	CATG	4 cut(s)	319, 392, 535, 660
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	4 cut(s)	315, 388, 531, 656
FblI	GTMKAC	2 cut(s)	18, 182
Fnu4HI	GCNGC	8 cut(s)	326, 396, 446, 449, 499, 641, 644, 652
Fsp4HI	GCNGC	8 cut(s)	326, 396, 446, 449, 499, 641, 644, 652
FspBI	CTAG	1 cut(s)	505
GluI	GCNGC	8 cut(s)	326, 396, 446, 449, 499, 641, 644, 652
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	185, 617
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	2 cut(s)	154, 463
Hin1II	CATG	4 cut(s)	319, 392, 535, 660
HinfI	GANTC	1 cut(s)	626
HpaII	CCGG	2 cut(s)	154, 463
Hpy166II	GTNNAC	2 cut(s)	19, 183
Hpy188I	TCNGA	2 cut(s)	81, 120
Hpy188III	TCNNGA	4 cut(s)	154, 202, 486, 630
Hpy8I	GTNNAC	2 cut(s)	19, 183
HpyCH4III	ACNGT	2 cut(s)	180, 420
HpyCH4IV	ACGT	2 cut(s)	27, 185
HpyCH4V	TGCA	4 cut(s)	32, 448, 475, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	325, 331, 392, 521, 607
HpyF3I	CTNAG	4 cut(s)	117, 212, 320, 353
HpySE526I	ACGT	2 cut(s)	27, 185
Hsp92II	CATG	4 cut(s)	319, 392, 535, 660
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	219, 557
LmnI	GCTCC	3 cut(s)	156, 204, 598
Lsp1109I	GCAGC	7 cut(s)	337, 407, 432, 460, 627, 630, 663
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	2 cut(s)	27, 185
MaeIII	GTNAC	2 cut(s)	207, 229
MalI	GATC	2 cut(s)	221, 559
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	2 cut(s)	219, 557
MboII	GAAGA	4 cut(s)	133, 214, 274, 383
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	2 cut(s)	388, 592
MluCI	AATT	3 cut(s)	257, 348, 360
MmeI	TCCRAC	1 cut(s)	231
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	2 cut(s)	154, 463
MspR9I	CCNGG	5 cut(s)	413, 463, 464, 550, 607
MvaI	CCWGG	3 cut(s)	413, 550, 607
MwoI	GCNNNNNNNGC	5 cut(s)	325, 331, 392, 521, 607
NciI	CCSGG	2 cut(s)	463, 464
NdeII	GATC	2 cut(s)	219, 557
NlaIII	CATG	4 cut(s)	319, 392, 535, 660
NlaIV	GGNNCC	3 cut(s)	57, 114, 152
NmuCI	GTSAC	2 cut(s)	207, 229
PasI	CCCWGGG	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	626
PkrI	GCNGC	8 cut(s)	327, 397, 447, 450, 500, 642, 645, 653
Psp6I	CCWGG	3 cut(s)	411, 548, 605
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	3 cut(s)	411, 548, 605
PspN4I	GGNNCC	3 cut(s)	57, 114, 152
PspPI	GGNCC	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	8 cut(s)	326, 396, 446, 449, 499, 641, 644, 652
Sau3AI	GATC	2 cut(s)	219, 557
Sau96I	GGNCC	1 cut(s)	465
ScrFI	CCNGG	5 cut(s)	413, 463, 464, 550, 607
SduI	GDGCHC	2 cut(s)	388, 592
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	446
SmaI	CCCGGG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	3 cut(s)	257, 348, 360
SsiI	CCGC	2 cut(s)	498, 524
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	5 cut(s)	411, 461, 462, 548, 605
TaaI	ACNGT	2 cut(s)	180, 420
TaiI	ACGT	2 cut(s)	30, 188
TaqI	TCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	257, 348, 360
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	3 cut(s)	183, 458, 597
TseFI	GTSAC	2 cut(s)	207, 229
TseI	GCWGC	7 cut(s)	325, 395, 445, 448, 640, 643, 651
Tsp45I	GTSAC	2 cut(s)	207, 229
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	140
TspMI	CCCGGG	1 cut(s)	462
TspRI	CASTG	3 cut(s)	183, 458, 597
Vha464I	CTTAAG	1 cut(s)	565
XapI	RAATTY	2 cut(s)	348, 360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmaI	CCCGGG	1 cut(s)	462
XmiI	GTMKAC	2 cut(s)	18, 182
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.