Rmu_sc0002039.1_g000004

invertase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002039.1
OG0025526
Physical Location & Seq
Forward (+)
22013 .. 22231
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002039.1_g000004.1.cds

Sequence Viewer

Length: 219 bp
atgagtgatgatttcatcgaacaatcttgcaagatagctgctggtcgtgaaccatctttgaactacaccttctgtgtctcaactcttaaggccagccctaaaagccatggtgcagaccttgatggactcatgtgcatcgtacttagccaagccatagacaaggtggcctacatcaatgacctcatccaaaagttggcgaaggatccgacagtcgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

72

Amino Acids

7.8

Weight (kDa)

4.83

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025526)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002039.1_g000004
rosa_samantha Rh7CG249800 Rh7DG240800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 193
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 2 cut(s) 197, 210
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 197, 210
AoxI GGCC 2 cut(s) 90, 165
ApeKI GCWGC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 61, 116
BcoDI GTCTC 1 cut(s) 82
BfrI CTTAAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 2 cut(s) 92, 167
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 92, 167
Bsp143I GATC 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 106
BspANI GGCC 2 cut(s) 92, 167
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 197, 210
BspTI CTTAAG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 211
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 2 cut(s) 92, 167
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 107, 130
CviJI RGCY 7 cut(s) 38, 92, 96, 105, 147, 152, 167
CviKI_1 RGCY 7 cut(s) 38, 92, 96, 105, 147, 152, 167
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 110, 133
FaiI YATR 3 cut(s) 108, 131, 155
FatI CATG 2 cut(s) 106, 129
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 92, 167
Hin1II CATG 2 cut(s) 110, 133
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 50, 214
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 50, 214
HpyAV CCTTC 2 cut(s) 79, 193
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 30, 113, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 110, 133
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 27, 106
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 144
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MflI RGATCY 1 cut(s) 202
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 1 cut(s) 191
MseI TTAA 1 cut(s) 87
MspCI CTTAAG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 102
NcoI CCATGG 1 cut(s) 106
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 110, 133
NlaIV GGNNCC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 120
SetI ASST 5 cut(s) 40, 71, 120, 165, 183
SfaNI GCATC 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 18, 213
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 4
Van91I CCANNNNNTGG 1 cut(s) 193
Vha464I CTTAAG 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.