Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002063.1

Orthogroup ID

OG0023079

Physical Location & Seq

Genomic Coordinates Forward (+)

9389 .. 9913

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002063.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtctatcttcttctcaacttatggctcctttgccgcaacagtgatctttggctgttccctggcggagcaaatcatcccgaagcaggtgagaaaatacatgttctcactcctcatgtcgtccttgttctcttctgagcgaacttttgtggttgaacagatccgcattagcaaaacccctaagcagaagaccaccgccttcgcccttgacgacgatcaagaagtcaccaacacattcgaaaacttcaatgtcaagtggcgttacgtgtgcattgaaccaaaggaccgtctctccgatgaaaagcgtttatacaaactgattttccacaagaaacacagaggttatgtgatagactcctacttggccaatgtgtatgctcaagctaaagacatcaagaaaggggacagaatcaccagaaggggaagtttcttcttcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

146

Amino Acids

17.14

Weight (kDa)

9.64

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002063.1_g000003 Rmu_sc0004947.1_g000020
rosa_rugosa	Rorug01G0384700
rosa_samantha	Rh1BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	4 cut(s)	36, 65, 163, 195
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	2 cut(s)	99, 264
AgsI	TTSAA	3 cut(s)	155, 247, 275
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	100, 217, 403
AsuII	TTCGAA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	45, 159, 214
BspACI	CCGC	4 cut(s)	36, 65, 163, 195
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	45, 159, 214
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	43, 287
Bst6I	CTCTTC	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	135, 180
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	3 cut(s)	48, 162, 217
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	45, 159, 214
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	2 cut(s)	100, 115
CviJI	RGCY	4 cut(s)	27, 54, 365, 383
CviKI_1	RGCY	4 cut(s)	27, 54, 365, 383
DdeI	CTNAG	2 cut(s)	135, 180
DpnI	GATC	3 cut(s)	47, 161, 216
DpnII	GATC	3 cut(s)	45, 159, 214
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	2 cut(s)	103, 118
FaiI	YATR	6 cut(s)	24, 101, 116, 310, 345, 375
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	2 cut(s)	99, 114
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	365
Hin1II	CATG	2 cut(s)	103, 118
HinfI	GANTC	2 cut(s)	353, 408
HphI	GGTGA	3 cut(s)	100, 217, 403
Hpy188I	TCNGA	2 cut(s)	136, 295
Hpy188III	TCNNGA	3 cut(s)	79, 218, 394
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	208, 411
HpyCH4III	ACNGT	2 cut(s)	43, 287
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	270
HpyF3I	CTNAG	2 cut(s)	135, 180
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	103, 118
Kzo9I	GATC	3 cut(s)	45, 159, 214
LmnI	GCTCC	2 cut(s)	32, 67
LpnPI	CCDG	4 cut(s)	47, 71, 74, 427
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	223, 260
MalI	GATC	3 cut(s)	47, 161, 216
MboI	GATC	3 cut(s)	45, 159, 214
MboII	GAAGA	5 cut(s)	4, 123, 199, 421, 424
MflI	RGATCY	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	2 cut(s)	122, 332
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	3 cut(s)	45, 159, 214
NlaIII	CATG	2 cut(s)	103, 118
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	237
PaqCI	CACCTGC	1 cut(s)	76
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	159
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	45, 159, 214
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	4 cut(s)	90, 267, 343, 385
SfuI	TTCGAA	1 cut(s)	237
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SsiI	CCGC	4 cut(s)	36, 65, 163, 195
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	43, 287
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	237
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	408
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.