Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0023079

Physical Location & Seq

Genomic Coordinates Forward (+)

49090857 .. 49091560

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG360400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCCATCTTCTTCTCAACTTTCGGCTCCTTTGCCGCAACAGTGATCTTTGGCCGTTCCCTGGCGGAGCAAATCATCCCGAAGCAGGTGAGAAAATACATGTTCTCACTCCTCATGTCGTCCTTGTTCTCTTCTGAGCGAACTTTTGTGGTTGAAGAGTACACTGAAGTCGGAGAACGCAACCAAATATACGACTACGTTGAGCTCTACCTCCGAGCTAAAATTGGCCCCCAAACTCGAAGCGTCCGCATTAGCAAAACCCCTAAGCAGAAGACCACCGCCTTCGCCCTCGACGACGATCAAGAAGTCACCGACACATTCGAAAACTTCAGTGTCAAGTGGCGTTATGTGTGCATTGAACCAAAGGACCGTATCTCCGATGAAAAGCGTTTATACAAACTGATTTTCCACAAGAAGCACAGAGGTTATGTGATAGACTCCTACTTGGCCAATGTGTATGCTCAGGCTAAAGACATCAAGAAAGGGGAAAAGGTCCTCAAGATTTACACTCGCAGTCAGTCTTCACATAAATTCTGGGAATCGACAATATTTGAGCATCCTTCAACTTTTGCCACATTAGCCATGGAACCTGCGGAAAAGAAAAGGATTATGGACGATTTGGACTTGTTTGTGCAGAGGGGGGGAGTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

217

Amino Acids

25.38

Weight (kDa)

9.21

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	26 - 118	4e-22	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0023079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002063.1_g000003 Rmu_sc0004947.1_g000020
rosa_rugosa	Rorug01G0384700
rosa_samantha	Rh1BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	2 cut(s)	76, 598
AciI	CCGC	5 cut(s)	36, 65, 247, 279, 593
AcoI	YGGCCR	2 cut(s)	52, 447
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	2 cut(s)	186, 313
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	61, 85
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	155, 359, 564
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	205, 218
AluI	AGCT	2 cut(s)	205, 218
Alw21I	GWGCWC	1 cut(s)	207
AoxI	GGCC	3 cut(s)	52, 226, 447
ApoI	RAATTY	1 cut(s)	530
AspS9I	GGNCC	3 cut(s)	227, 367, 493
AsuHPI	GGTGA	2 cut(s)	100, 301
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	2 cut(s)	367, 493
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	278, 513
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	62
BfuAI	ACCTGC	2 cut(s)	76, 598
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	2 cut(s)	367, 493
BmgT120I	GGNCC	3 cut(s)	227, 367, 493
BmiI	GGNNCC	3 cut(s)	28, 229, 588
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	2 cut(s)	278, 513
Bpu10I	CCTNAGC	2 cut(s)	264, 462
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	60, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 85
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	60, 582
BseGI	GGATG	2 cut(s)	75, 556
BseLI	CCNNNNNNNGG	2 cut(s)	61, 85
BseMII	CTCAG	2 cut(s)	126, 476
BseRI	GAGGAG	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	653
BshFI	GGCC	3 cut(s)	54, 228, 449
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	61, 85
BsnI	GGCC	3 cut(s)	54, 228, 449
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	45, 298
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	5 cut(s)	36, 65, 247, 279, 593
BspANI	GGCC	3 cut(s)	54, 228, 449
BspCNI	CTCAG	2 cut(s)	127, 475
BspLI	GGNNCC	3 cut(s)	28, 229, 588
BspMI	ACCTGC	2 cut(s)	76, 598
BspT104I	TTCGAA	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	60, 582
BssMI	GATC	2 cut(s)	45, 298
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	43, 371
Bst6I	CTCTTC	2 cut(s)	136, 150
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	135, 264, 462
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	75, 556
BstKTI	GATC	2 cut(s)	48, 301
BstMBI	GATC	2 cut(s)	45, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	278, 513
BsuRI	GGCC	3 cut(s)	54, 228, 449
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	75, 556
BtsIMutI	CAGTG	3 cut(s)	48, 162, 337
BveI	ACCTGC	2 cut(s)	76, 598
Cfr13I	GGNCC	3 cut(s)	227, 367, 493
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	100, 115, 583
CviJI	RGCY	8 cut(s)	27, 54, 205, 218, 228, 449, 467, 581
CviKI_1	RGCY	8 cut(s)	27, 54, 205, 218, 228, 449, 467, 581
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	135, 264, 462
DpnI	GATC	2 cut(s)	47, 300
DpnII	GATC	2 cut(s)	45, 298
EaeI	YGGCCR	2 cut(s)	52, 447
Eam1104I	CTCTTC	2 cut(s)	136, 150
EarI	CTCTTC	2 cut(s)	136, 150
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	367, 493
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	186, 313
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	3 cut(s)	103, 118, 586
FatI	CATG	3 cut(s)	99, 114, 582
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	2 cut(s)	62, 543
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	54, 228, 449
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	103, 118, 586
HinfI	GANTC	2 cut(s)	437, 539
HphI	GGTGA	2 cut(s)	100, 301
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	136, 173, 215, 379
Hpy188III	TCNNGA	4 cut(s)	79, 302, 478, 499
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	296, 299
HpyAV	CCTTC	2 cut(s)	292, 570
HpyCH4III	ACNGT	2 cut(s)	43, 371
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	354, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	3 cut(s)	135, 264, 462
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	103, 118, 586
Kzo9I	GATC	2 cut(s)	45, 298
LmnI	GCTCC	2 cut(s)	32, 67
LpnPI	CCDG	6 cut(s)	47, 71, 74, 449, 520, 603
LweI	GCATC	1 cut(s)	565
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	47, 300
MboI	GATC	2 cut(s)	45, 298
MboII	GAAGA	5 cut(s)	4, 123, 167, 283, 513
MhlI	GDGCHC	1 cut(s)	207
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	2 cut(s)	222, 530
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	122, 221, 299, 416, 506, 630
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	45, 298
NlaIII	CATG	3 cut(s)	103, 118, 586
NlaIV	GGNNCC	3 cut(s)	28, 229, 588
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	76
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	493
PscI	ACATGT	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	28, 229, 588
PspPI	GGNCC	3 cut(s)	227, 367, 493
PspPPI	RGGWCCY	1 cut(s)	493
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	45, 298
Sau96I	GGNCC	3 cut(s)	227, 367, 493
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	90, 201, 207, 213, 220, 427, 495, 592
SfaNI	GCATC	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	2 cut(s)	367, 493
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	222, 530
SsiI	CCGC	5 cut(s)	36, 65, 247, 279, 593
SspI	AATATT	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	43, 371
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	238, 291, 321, 542
TasI	AATT	2 cut(s)	222, 530
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	3 cut(s)	48, 169, 337
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	3 cut(s)	48, 169, 337
VpaK11BI	GGWCC	2 cut(s)	367, 493
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.