Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002091.1

Orthogroup ID

OG0031186

Physical Location & Seq

Genomic Coordinates Reverse (-)

119151 .. 119543

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002091.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgcggaaatggatcgaggcagcaacgtaccctagattgactatgattgggcagagcctgggctctgtgtatctatcgtgggaagcattgaccaagttcactccagcttactatttcgacaccagtggatacgccttcacttacccaattgcgaggctatttggttgcagagtcagctgctacacacattaccctacaatcagcttggacatgctctctcgggttcaccagcagagctccatgtacaacaatgatgactttattgctcggaggtctgttttgcacaaatggtacattgatgatgataatgcaaatttaacaaaaatggctgagttattggtctattgcctcccaatagacgtctattggggggcaatagacgttttgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0001101 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0033993 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG11_N Glycos_transf_1

Protein Analysis

130

Amino Acids

15.15

Weight (kDa)

6.25

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031186)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002091.1_g000030 Rmu_sc0004359.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	3 cut(s)	29, 245, 293
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	4 cut(s)	107, 177, 204, 237
AluI	AGCT	4 cut(s)	107, 177, 204, 237
Alw21I	GWGCWC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	20, 177
ApoI	RAATTY	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	65, 239
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	32, 164
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	21, 178
BlsI	GCNGC	2 cut(s)	22, 179
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	32, 164
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	65, 239
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	32, 164
BsuI	GTATCC	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	28, 244, 292
CviAII	CATG	2 cut(s)	211, 241
CviJI	RGCY	8 cut(s)	57, 63, 107, 157, 177, 204, 237, 329
CviKI_1	RGCY	8 cut(s)	57, 63, 107, 157, 177, 204, 237, 329
CviQI	GTAC	3 cut(s)	28, 244, 292
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	2 cut(s)	65, 239
Eco53kI	GAGCTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	65, 239
FaeI	CATG	2 cut(s)	214, 244
FaiI	YATR	3 cut(s)	44, 212, 242
FatI	CATG	2 cut(s)	210, 240
Fnu4HI	GCNGC	2 cut(s)	21, 178
FriOI	GRGCYC	2 cut(s)	65, 239
Fsp4HI	GCNGC	2 cut(s)	21, 178
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	21, 178
GsuI	CTGGAG	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	214, 244
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	99, 226
Hpy188I	TCNGA	1 cut(s)	270
Hpy8I	GTNNAC	2 cut(s)	99, 226
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	3 cut(s)	26, 360, 381
HpyCH4V	TGCA	3 cut(s)	168, 283, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	3 cut(s)	26, 360, 381
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	214, 244
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	5 cut(s)	44, 71, 117, 136, 242
Lsp1109I	GCAGC	2 cut(s)	32, 164
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	3 cut(s)	26, 360, 381
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	65, 239
MluCI	AATT	3 cut(s)	147, 313, 388
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	10, 147, 264, 359
MseI	TTAA	2 cut(s)	317, 391
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	214, 244
NspI	RCATGY	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	22, 179
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	29, 245, 293
RsaNI	GTAC	3 cut(s)	28, 244, 292
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	317, 391
SatI	GCNGC	2 cut(s)	21, 178
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	2 cut(s)	65, 239
SetI	ASST	8 cut(s)	29, 109, 179, 206, 239, 275, 363, 384
Sse9I	AATT	3 cut(s)	147, 313, 388
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	3 cut(s)	29, 363, 384
TaqI	TCGA	2 cut(s)	15, 117
TasI	AATT	3 cut(s)	147, 313, 388
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	317, 391
Tru9I	TTAA	2 cut(s)	317, 391
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	20, 177
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	1 cut(s)	33
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.