Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0031186

Physical Location & Seq

Genomic Coordinates Reverse (-)

26230 .. 26565

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgattaggcagagcctgggctctgtgtatctatcatgggaagcattgaccaagttcactccagcttactattttgacaccagtggatacgccttcacttacccaattgcgaggctatttggttgcagagtcagctgctacacacattaccctacaatcagcttggacatgctctctcgggttcgcaagcggagctccatgtacaacaatgatgactttattgctcggaggtctgttttgcacgaacggtacattgatgatgataatgcaaatttaacaaaaatggctgagttgttgatctattgcctcccaatagatgtctattgggggcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0001101 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0033993 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG11_N Glycos_transf_1

Protein Analysis

111

Amino Acids

13.07

Weight (kDa)

7.69

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031186)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002091.1_g000030 Rmu_sc0004359.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	2 cut(s)	203, 251
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	65, 135, 162, 195
AluI	AGCT	4 cut(s)	65, 135, 162, 195
Alw21I	GWGCWC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	177
BanII	GRGCYC	2 cut(s)	23, 197
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	23, 197
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 192
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	202, 250
CviAII	CATG	3 cut(s)	36, 169, 199
CviJI	RGCY	8 cut(s)	15, 21, 65, 115, 135, 162, 195, 287
CviKI_1	RGCY	8 cut(s)	15, 21, 65, 115, 135, 162, 195, 287
CviQI	GTAC	2 cut(s)	202, 250
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	23, 197
Eco53kI	GAGCTC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	23, 197
FaeI	CATG	3 cut(s)	39, 172, 202
FaiI	YATR	3 cut(s)	37, 170, 200
FatI	CATG	3 cut(s)	35, 168, 198
Fnu4HI	GCNGC	1 cut(s)	136
FriOI	GRGCYC	2 cut(s)	23, 197
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	45
Hin1II	CATG	3 cut(s)	39, 172, 202
HinfI	GANTC	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	126, 241, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 192
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	39, 172, 202
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	192, 200
LpnPI	CCDG	4 cut(s)	2, 29, 75, 94
Lsp1109I	GCAGC	1 cut(s)	122
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	23, 197
MluCI	AATT	2 cut(s)	105, 271
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	105, 222, 317
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	132, 192
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	3 cut(s)	39, 172, 202
NspI	RCATGY	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	135
RsaI	GTAC	2 cut(s)	203, 251
RsaNI	GTAC	2 cut(s)	202, 250
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	23, 197
SetI	ASST	5 cut(s)	67, 137, 164, 197, 233
Sse9I	AATT	2 cut(s)	105, 271
SsiI	CCGC	1 cut(s)	190
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	2 cut(s)	105, 271
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	135
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.