Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002187.1

Orthogroup ID

OG0031191

Physical Location & Seq

Genomic Coordinates Forward (+)

133008 .. 137641

Gene Structure 4634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002187.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggcaaaggctggtgaggaagttgtggtggagaagtctaatacatgtggtgctagtttcaagaaacctgcgtatctcaagaagcatatgcaaagccattctcctgagagattgagcgacgggacttggcgggaattgcgggagagaatagcaacgacaatactaagaggatttgaattgcaattatcaattgttgaaagtagtgatgcagaggccttggaatggttggagaagatggtctgctgcagattctctgcaaataaggcaaaccagctgcgcatagaacaaaactctaaccagaccgactcgcctcctccttattgttgtgctgcaattgatgatactagaagcgctagtgctattaagatcattgctcttgacaatggccggttgggtgacgaccatctggtggagccggcggatggcggcggagagggaggagccgccggtttgggcccaggcgaggtcgaagtcattggagaagaactttccgcaggcggtggtcatgaggacagagccggggaaggattggaacttggcgtcggcgagggaggagatgacggggaggccgaggcggagaaagagattccccaagcgcgatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

201

Amino Acids

21.34

Weight (kDa)

4.62

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031191)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002187.1_g000036
rosa_samantha	Rh5BG540300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccII	CGCG	1 cut(s)	598
AciI	CCGC	9 cut(s)	130, 139, 419, 426, 429, 444, 492, 498, 575
AcoI	YGGCCR	1 cut(s)	385
AcyI	GRCGYC	1 cut(s)	540
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	4 cut(s)	222, 409, 422, 463
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	61, 176, 197
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	4 cut(s)	213, 385, 454, 567
ApaI	GGGCCC	1 cut(s)	458
ApeKI	GCWGC	3 cut(s)	243, 274, 329
AspLEI	GCGC	3 cut(s)	279, 353, 598
AspS9I	GGNCC	2 cut(s)	454, 455
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	26, 407
BaeGI	GKGCMC	1 cut(s)	458
BaeI	ACNNNNGTAYC	2 cut(s)	56, 89
BanII	GRGCYC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	230, 261, 316
BccI	CCATC	3 cut(s)	229, 411, 416
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	520
BfaI	CTAG	3 cut(s)	54, 345, 354
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	5 cut(s)	244, 275, 330, 427, 444
BlsI	GCNGC	5 cut(s)	245, 276, 331, 428, 445
Bme1390I	CCNGG	2 cut(s)	459, 520
BmgT120I	GGNCC	2 cut(s)	454, 455
BmiI	GGNNCC	3 cut(s)	414, 442, 456
BmrFI	CCNGG	2 cut(s)	459, 520
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	216, 457, 519, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 409, 422, 463
Bse118I	RCCGGY	3 cut(s)	387, 415, 446
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	4 cut(s)	216, 457, 519, 570
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	4 cut(s)	222, 409, 422, 463
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	3 cut(s)	303, 453, 567
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	230, 261, 316
Bsh1236I	CGCG	1 cut(s)	598
BshFI	GGCC	4 cut(s)	215, 387, 456, 569
BsiSI	CCGG	4 cut(s)	388, 416, 447, 519
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	4 cut(s)	222, 409, 422, 463
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	215, 387, 456, 569
Bsp120I	GGGCCC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	366
BspACI	CCGC	9 cut(s)	130, 139, 419, 426, 429, 444, 492, 498, 575
BspANI	GGCC	4 cut(s)	215, 387, 456, 569
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	598
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	3 cut(s)	414, 442, 456
BspMAI	CTGCAG	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	3 cut(s)	387, 415, 446
BssAI	RCCGGY	3 cut(s)	387, 415, 446
BssECI	CCNNGG	4 cut(s)	216, 457, 519, 570
BssMI	GATC	1 cut(s)	366
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	417, 496
BstDEI	CTNAG	2 cut(s)	105, 164
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	279, 353, 598
BstKTI	GATC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 263
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	457, 518
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	3 cut(s)	230, 261, 316
BsuRI	GGCC	4 cut(s)	215, 387, 456, 569
BtsCI	GGATG	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	417, 496
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	3 cut(s)	279, 353, 598
Cfr10I	RCCGGY	3 cut(s)	387, 415, 446
Cfr13I	GGNCC	2 cut(s)	454, 455
CseI	GACGC	1 cut(s)	529
CviAII	CATG	2 cut(s)	45, 506
DdeI	CTNAG	2 cut(s)	105, 164
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	3 cut(s)	434, 444, 590
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	458
Eco47III	AGCGCT	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	48, 509
FaiI	YATR	5 cut(s)	46, 87, 89, 281, 507
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	44, 505
FauI	CCCGC	2 cut(s)	123, 132
FauNDI	CATATG	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	244, 275, 330, 427, 444
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	5 cut(s)	244, 275, 330, 427, 444
FspBI	CTAG	3 cut(s)	54, 345, 354
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	3 cut(s)	278, 352, 597
GluI	GCNGC	5 cut(s)	244, 275, 330, 427, 444
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	215, 387, 456, 569
HapII	CCGG	4 cut(s)	388, 416, 447, 519
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	3 cut(s)	279, 353, 598
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	48, 509
Hin6I	GCGC	3 cut(s)	277, 351, 596
HinP1I	GCGC	3 cut(s)	277, 351, 596
HinfI	GANTC	3 cut(s)	249, 305, 586
HpaII	CCGG	4 cut(s)	388, 416, 447, 519
HphI	GGTGA	2 cut(s)	26, 407
Hpy188III	TCNNGA	5 cut(s)	61, 79, 104, 377, 506
Hpy99I	CGWCG	2 cut(s)	122, 545
HpyAV	CCTTC	1 cut(s)	518
HpyCH4V	TGCA	6 cut(s)	91, 181, 209, 246, 257, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 263
HpyF3I	CTNAG	2 cut(s)	105, 164
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	2 cut(s)	48, 509
HspAI	GCGC	3 cut(s)	277, 351, 596
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	412, 440
Lsp1109I	GCAGC	3 cut(s)	230, 261, 316
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	54, 345, 354
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	2 cut(s)	244, 494
MfeI	CAATTG	2 cut(s)	189, 333
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	5 cut(s)	134, 176, 182, 189, 333
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	207
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	4 cut(s)	388, 416, 447, 519
MspR9I	CCNGG	2 cut(s)	459, 520
MunI	CAATTG	2 cut(s)	189, 333
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	2 cut(s)	136, 263
NaeI	GCCGGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	520
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	1 cut(s)	366
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	48, 509
NlaIV	GGNNCC	3 cut(s)	414, 442, 456
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	395
NsbI	TGCGCA	1 cut(s)	278
NspI	RCATGY	1 cut(s)	48
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	215
PciI	ACATGT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	249, 586
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	5 cut(s)	245, 276, 331, 428, 445
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	3 cut(s)	414, 442, 456
PspOMI	GGGCCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	454, 455
PstI	CTGCAG	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	5 cut(s)	244, 275, 330, 427, 444
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	2 cut(s)	454, 455
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	459, 520
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	3 cut(s)	70, 276, 468
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	134, 176, 182, 189, 333
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	9 cut(s)	130, 139, 419, 426, 429, 444, 492, 498, 575
SspMI	CTAG	3 cut(s)	54, 345, 354
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	457, 518
StyI	CCWWGG	1 cut(s)	216
TaqI	TCGA	1 cut(s)	468
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	5 cut(s)	134, 176, 182, 189, 333
TauI	GCSGC	2 cut(s)	429, 446
TfiI	GAWTC	2 cut(s)	249, 586
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	3 cut(s)	243, 274, 329
Tsp45I	GTSAC	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	409
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	3 cut(s)	54, 345, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.