Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0031191

Physical Location & Seq

Genomic Coordinates Forward (+)

85518567 .. 85520866

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG540300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAAATGGCAAAGTCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATGTGGTGCTAGTTTCAAGAAACCTACGTATCTCAAGAAGCATATGCAAAGCCATTCTCCTGAGAGATTGAGCGACGGGACTTGGCAGGAATTGCGAGAGAGAATAGCAACGACAATACTAAGAGGATTTGAATTGCAATTATCAATTGTTGAAAGTAGTGATGCAGAGGCCTTGGAATGGTTGGAGAAGATGGTCTGCTGCAGATTCTCTGCAAATAAGGCAAACCAGCTGCGCATAGAACAAAGTAAGATTCTTTCTATCAATGAAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

108

Amino Acids

12.25

Weight (kDa)

7.72

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031191)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002187.1_g000036
rosa_samantha	Rh5BG540300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	67, 182, 203
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	249, 280
AspLEI	GCGC	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	62, 95
BbvI	GCAGC	2 cut(s)	236, 267
BccI	CCATC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	250
BisI	GCNGC	2 cut(s)	250, 281
BlsI	GCNGC	2 cut(s)	251, 282
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	236, 267
BshFI	GGCC	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	111, 170
BstHHI	GCGC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 269
BstNSI	RCATGY	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	250
BstSNI	TACGTA	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	236, 267
BsuRI	GGCC	1 cut(s)	221
CfoI	GCGC	1 cut(s)	285
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	3 cut(s)	102, 221, 280
CviKI_1	RGCY	3 cut(s)	102, 221, 280
DdeI	CTNAG	2 cut(s)	111, 170
Eco105I	TACGTA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	54
FaiI	YATR	4 cut(s)	52, 93, 95, 287
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	250, 281
Fsp4HI	GCNGC	2 cut(s)	250, 281
FspBI	CTAG	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	250, 281
HaeIII	GGCC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	255, 301
Hpy188III	TCNNGA	3 cut(s)	67, 85, 110
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	5 cut(s)	97, 187, 215, 252, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 269
HpyF3I	CTNAG	2 cut(s)	111, 170
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	54
HspAI	GCGC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	3, 122, 123, 290
Lsp1109I	GCAGC	2 cut(s)	236, 267
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	77
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	4 cut(s)	140, 182, 188, 195
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	167, 211
MspA1I	CMGCKG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	142, 269
NdeI	CATATG	1 cut(s)	93
NlaIII	CATG	1 cut(s)	54
NsbI	TGCGCA	1 cut(s)	284
NspI	RCATGY	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	221
PciI	ACATGT	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	255, 301
PkrI	GCNGC	2 cut(s)	251, 282
Ppu21I	YACGTR	1 cut(s)	78
PscI	ACATGT	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	280
SatI	GCNGC	2 cut(s)	250, 281
SetI	ASST	3 cut(s)	76, 80, 282
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SnaBI	TACGTA	1 cut(s)	78
Sse9I	AATT	4 cut(s)	140, 182, 188, 195
SseBI	AGGCCT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	80
TasI	AATT	4 cut(s)	140, 182, 188, 195
TfiI	GAWTC	2 cut(s)	255, 301
TseI	GCWGC	2 cut(s)	249, 280
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.