Rmu_sc0002205.1_g000001

Ribosomal protein L6e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002205.1
OG0031192
Physical Location & Seq
Forward (+)
2677 .. 7691
5015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002205.1_g000001.1.cds

Sequence Viewer

Length: 1209 bp
atgagtgagcatcatcaggtagccggtgacacaaagcctcctactcactcccaagactacgctctatcgcctcagaaaagaccaaatcgcagtcagtcccgtcaggtgttagcgccgtctgaaagtacacccctaggctcaggcgccgccgatcgccgtagacaatgccgccaccaccatgccgctggagtccaacccttacgtcaccaatctggctccgcctccttctttgtccgtcaagagtttggtcgtggttttggagggggagagagagagtttggtcgtggttttggagggggagagagagagtttggtcgtggttttggagggggagagagagagtttggtcgtggttttggagggggagagagagagtttggtcgtgtgcccaccacagcttgtcccactctcgatggttaccacagacctctagaggagaacaaggcgagcaaaacccactttgaatcgcttcctatggtggccggaggaggaagaatgaagcctgcaaagggaggaggccgaagcgggcttggggggagagagagagaaaccgagtttcccaaaatggaaatctggcattctagccttttttgcaattttcagaaattttcccgcagcagagtcgcaatggcaccaaaagcgagagttccccgaaagacccgaaacccagatctggtccgtggagtgggtaagtactccaggtccaagatgtaccacaagcgcggtctctgggccatcaaggccaaaaatggcggtgccttcccacgtcacgacgccaagccggcggctgaggctccgtcggtgaagcctcccaagttctaccctgctgaggacgtcaagaagcccctggtcaacaagcacaagcccaagcccaccaagctcagggcgagtattactcccgggactgtgttgattatactggctggaaggtttaaggggaagagagttgttttccttaagcagctttcatctgggttgcttcttgttactgggccattcaagattaatggtgttcctttgagacgtgtgaatcagtcctacgtgattggcacttccaccaaggtcgatatttctggggttaatgtggaaaaatttgatgacaagtattttggaaaggccgtggaaaagaagaagaagaagggggagggagagttttttgaggcagagaaagaggttagccttatcaactcgtcatttacaatttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

402

Amino Acids

44.22

Weight (kDa)

10.44

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031192)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002205.1_g000001 Rmu_sc0003742.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 837
AccB1I GGYRCC 3 cut(s) 143, 631, 755
AccI GTMKAC 1 cut(s) 160
AccII CGCG 1 cut(s) 723
AciI CCGC 9 cut(s) 147, 169, 183, 219, 525, 613, 723, 753, 785
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 605, 1091
AcyI GRCGYC 3 cut(s) 144, 774, 834
AfaI GTAC 3 cut(s) 127, 695, 713
AfiI CCNNNNNNNGG 5 cut(s) 509, 673, 685, 829, 882
AflII CTTAAG 1 cut(s) 956
AflIII ACRYGT 1 cut(s) 1024
AgsI TTSAA 2 cut(s) 464, 1000
AjiI CACGTC 2 cut(s) 767, 1025
AjnI CCWGG 2 cut(s) 698, 846
AluBI AGCT 3 cut(s) 398, 880, 964
AluI AGCT 3 cut(s) 398, 880, 964
Alw26I GTCTC 2 cut(s) 731, 1015
Ama87I CYCGRG 1 cut(s) 899
AoxI GGCC 6 cut(s) 480, 517, 732, 741, 992, 1116
ApeKI GCWGC 2 cut(s) 615, 961
ApoI RAATTY 2 cut(s) 605, 1091
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
AseI ATTAAT 1 cut(s) 1005
Asp700I GAANNNNTTC 1 cut(s) 468
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 3 cut(s) 115, 146, 723
AspS9I GGNCC 4 cut(s) 676, 702, 732, 992
AsuC2I CCSGG 2 cut(s) 900, 901
AsuHPI GGTGA 3 cut(s) 38, 197, 814
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 2 cut(s) 676, 702
AvrII CCTAGG 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 3 cut(s) 143, 631, 755
BbvCI CCTCAGC 2 cut(s) 789, 828
BbvI GCAGC 2 cut(s) 627, 973
BccI CCATC 2 cut(s) 407, 743
BceAI ACGGC 3 cut(s) 100, 141, 1103
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 2 cut(s) 700, 848
BcnI CCSGG 2 cut(s) 900, 901
BcoDI GTCTC 2 cut(s) 731, 1015
BfaI CTAG 3 cut(s) 134, 431, 582
BfoI RGCGCY 2 cut(s) 116, 147
BfrI CTTAAG 1 cut(s) 956
BglI GCCNNNNNGGC 2 cut(s) 740, 782
BglII AGATCT 1 cut(s) 670
BisI GCNGC 6 cut(s) 147, 169, 183, 616, 786, 962
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 6 cut(s) 148, 170, 184, 617, 787, 963
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 4 cut(s) 700, 848, 900, 901
Bme18I GGWCC 2 cut(s) 676, 702
BmeT110I CYCGRG 1 cut(s) 899
BmgBI CACGTC 2 cut(s) 767, 1025
BmgT120I GGNCC 4 cut(s) 676, 702, 732, 992
BmiI GGNNCC 5 cut(s) 145, 217, 633, 757, 795
BmrFI CCNGG 4 cut(s) 700, 848, 900, 901
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 999
BplI GAGNNNNNCTC 2 cut(s) 880, 912
BpmI CTGGAG 2 cut(s) 207, 682
Bpu10I CCTNAGC 4 cut(s) 139, 789, 828, 881
BpuMI CCSGG 2 cut(s) 900, 901
BsaAI YACGTR 1 cut(s) 1042
BsaHI GRCGYC 3 cut(s) 144, 774, 834
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 6 cut(s) 133, 679, 846, 899, 1059, 1119
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 1136, 1166
Bsc4I CCNNNNNNNGG 5 cut(s) 509, 673, 685, 829, 882
Bse118I RCCGGY 2 cut(s) 23, 781
Bse1I ACTGG 2 cut(s) 924, 994
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 2 cut(s) 700, 848
BseDI CCNNGG 6 cut(s) 133, 679, 846, 899, 1059, 1119
BseLI CCNNNNNNNGG 5 cut(s) 509, 673, 685, 829, 882
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 5 cut(s) 86, 153, 780, 819, 895
BseNI ACTGG 2 cut(s) 924, 994
BseRI GAGGAG 3 cut(s) 449, 501, 528
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 2 cut(s) 627, 973
Bsh1236I CGCG 1 cut(s) 723
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 6 cut(s) 482, 519, 734, 743, 994, 1118
BshNI GGYRCC 3 cut(s) 143, 631, 755
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 4 cut(s) 24, 483, 782, 900
BslFI GGGAC 3 cut(s) 82, 387, 916
BslI CCNNNNNNNGG 5 cut(s) 509, 673, 685, 829, 882
BsmAI GTCTC 2 cut(s) 731, 1015
BsmBI CGTCTC 1 cut(s) 1015
BsmFI GGGAC 3 cut(s) 82, 387, 916
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 6 cut(s) 482, 519, 734, 743, 994, 1118
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 899
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 151, 670
BspACI CCGC 9 cut(s) 147, 169, 183, 219, 525, 613, 723, 753, 785
BspANI GGCC 6 cut(s) 482, 519, 734, 743, 994, 1118
BspCNI CTCAG 5 cut(s) 85, 152, 781, 820, 894
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 5 cut(s) 145, 217, 633, 757, 795
BspT107I GGYRCC 3 cut(s) 143, 631, 755
BspTI CTTAAG 1 cut(s) 956
BspTNI GGTCTC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 2 cut(s) 23, 781
BsrI ACTGG 2 cut(s) 924, 994
BssAI RCCGGY 2 cut(s) 23, 781
BssECI CCNNGG 6 cut(s) 133, 679, 846, 899, 1059, 1119
BssMI GATC 2 cut(s) 151, 670
BssNI GRCGYC 3 cut(s) 144, 774, 834
BssT1I CCWWGG 2 cut(s) 133, 1059
Bst2UI CCWGG 2 cut(s) 700, 848
Bst4CI ACNGT 1 cut(s) 907
Bst6I CTCTTC 1 cut(s) 935
BstACI GRCGYC 3 cut(s) 144, 774, 834
BstAFI CTTAAG 1 cut(s) 956
BstBAI YACGTR 1 cut(s) 1042
BstC8I GCNNGC 4 cut(s) 448, 504, 527, 783
BstDEI CTNAG 5 cut(s) 72, 139, 789, 828, 881
BstDSI CCRYGG 2 cut(s) 679, 1119
BstEII GGTNACC 1 cut(s) 416
BstFNI CGCG 1 cut(s) 723
BstH2I RGCGCY 2 cut(s) 116, 147
BstHHI GCGC 3 cut(s) 115, 146, 723
BstKTI GATC 2 cut(s) 154, 673
BstMAI GTCTC 2 cut(s) 731, 1015
BstMBI GATC 2 cut(s) 151, 670
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 6 cut(s) 591, 638, 740, 782, 791, 877
BstNI CCWGG 2 cut(s) 700, 848
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 4 cut(s) 698, 846, 898, 899
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 2 cut(s) 627, 973
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 6 cut(s) 482, 519, 734, 743, 994, 1118
BtgI CCRYGG 2 cut(s) 679, 1119
BtrI CACGTC 2 cut(s) 767, 1025
Cac8I GCNNGC 4 cut(s) 448, 504, 527, 783
CfoI GCGC 3 cut(s) 115, 146, 723
Cfr10I RCCGGY 2 cut(s) 23, 781
Cfr13I GGNCC 4 cut(s) 676, 702, 732, 992
Cfr9I CCCGGG 1 cut(s) 899
CseI GACGC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 126, 694, 712
CviAII CATG 1 cut(s) 179
CviQI GTAC 3 cut(s) 126, 694, 712
DdeI CTNAG 5 cut(s) 72, 139, 789, 828, 881
DinI GGCGCC 1 cut(s) 145
DpnI GATC 2 cut(s) 153, 672
DpnII GATC 2 cut(s) 151, 670
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 935
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 133, 1059
Eco31I GGTCTC 1 cut(s) 731
Eco47I GGWCC 2 cut(s) 676, 702
Eco88I CYCGRG 1 cut(s) 899
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 698, 846
EcoT14I CCWWGG 2 cut(s) 133, 1059
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 2 cut(s) 133, 1059
Esp3I CGTCTC 1 cut(s) 1015
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 180, 476, 917
FaqI GGGAC 3 cut(s) 82, 387, 916
FatI CATG 1 cut(s) 178
FauI CCCGC 2 cut(s) 518, 620
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 6 cut(s) 147, 169, 183, 616, 786, 962
Fsp4HI GCNGC 6 cut(s) 147, 169, 183, 616, 786, 962
FspBI CTAG 3 cut(s) 134, 431, 582
GlaI GCGC 3 cut(s) 114, 145, 722
GluI GCNGC 6 cut(s) 147, 169, 183, 616, 786, 962
GsuI CTGGAG 2 cut(s) 207, 682
HaeII RGCGCY 2 cut(s) 116, 147
HaeIII GGCC 6 cut(s) 482, 519, 734, 743, 994, 1118
HapII CCGG 4 cut(s) 24, 483, 782, 900
HgaI GACGC 1 cut(s) 782
HhaI GCGC 3 cut(s) 115, 146, 723
Hin1I GRCGYC 3 cut(s) 144, 774, 834
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 3 cut(s) 113, 144, 721
HinP1I GCGC 3 cut(s) 113, 144, 721
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 4 cut(s) 189, 464, 621, 1030
HpaII CCGG 4 cut(s) 24, 483, 782, 900
HphI GGTGA 3 cut(s) 38, 197, 814
Hpy166II GTNNAC 3 cut(s) 128, 161, 853
Hpy188I TCNGA 3 cut(s) 75, 121, 603
Hpy188III TCNNGA 7 cut(s) 239, 410, 431, 770, 838, 1000, 1206
Hpy8I GTNNAC 3 cut(s) 128, 161, 853
Hpy99I CGWCG 2 cut(s) 776, 802
HpyAV CCTTC 4 cut(s) 235, 769, 921, 1132
HpyCH4III ACNGT 1 cut(s) 907
HpyCH4IV ACGT 5 cut(s) 202, 766, 834, 1024, 1041
HpyCH4V TGCA 2 cut(s) 506, 594
HpyF10VI GCNNNNNNNGC 6 cut(s) 591, 638, 740, 782, 791, 877
HpyF3I CTNAG 5 cut(s) 72, 139, 789, 828, 881
HpySE526I ACGT 5 cut(s) 202, 766, 834, 1024, 1041
Hsp92I GRCGYC 3 cut(s) 144, 774, 834
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 3 cut(s) 113, 144, 721
KasI GGCGCC 1 cut(s) 143
KroI GCCGGC 1 cut(s) 781
KroNI GCCGGC 1 cut(s) 783
Kzo9I GATC 2 cut(s) 151, 670
LmnI GCTCC 2 cut(s) 221, 799
Lsp1109I GCAGC 2 cut(s) 627, 973
LweI GCATC 1 cut(s) 19
MaeI CTAG 3 cut(s) 134, 431, 582
MaeII ACGT 5 cut(s) 202, 766, 834, 1024, 1041
MaeIII GTNAC 5 cut(s) 26, 203, 416, 767, 985
MalI GATC 2 cut(s) 153, 672
MboI GATC 2 cut(s) 151, 670
MboII GAAGA 5 cut(s) 504, 952, 1141, 1144, 1147
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 4 cut(s) 595, 605, 1091, 1200
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 2 cut(s) 198, 630
MmeI TCCRAC 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 4 cut(s) 933, 957, 1005, 1080
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 185
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 4 cut(s) 24, 483, 782, 900
MspR9I CCNGG 4 cut(s) 700, 848, 900, 901
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 2 cut(s) 700, 848
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 6 cut(s) 591, 638, 740, 782, 791, 877
NaeI GCCGGC 1 cut(s) 783
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 2 cut(s) 900, 901
NdeII GATC 2 cut(s) 151, 670
NgoMIV GCCGGC 1 cut(s) 781
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 5 cut(s) 145, 217, 633, 757, 795
NmuCI GTSAC 3 cut(s) 26, 203, 767
PctI GAATGC 1 cut(s) 577
PdiI GCCGGC 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 464, 1030
PkrI GCNGC 6 cut(s) 148, 170, 184, 617, 787, 963
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 2 cut(s) 197, 629
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 2 cut(s) 197, 629
Ppu21I YACGTR 1 cut(s) 1042
PshBI ATTAAT 1 cut(s) 1005
Psp6I CCWGG 2 cut(s) 698, 846
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 2 cut(s) 698, 846
PspN4I GGNNCC 5 cut(s) 145, 217, 633, 757, 795
PspPI GGNCC 4 cut(s) 676, 702, 732, 992
PsuI RGATCY 1 cut(s) 670
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 3 cut(s) 127, 695, 713
RsaNI GTAC 3 cut(s) 126, 694, 712
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 4 cut(s) 933, 957, 1005, 1080
SatI GCNGC 6 cut(s) 147, 169, 183, 616, 786, 962
Sau3AI GATC 2 cut(s) 151, 670
Sau96I GGNCC 4 cut(s) 676, 702, 732, 992
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 2 cut(s) 198, 630
ScrFI CCNGG 4 cut(s) 700, 848, 900, 901
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 1 cut(s) 19
SfiI GGCCNNNNNGGCC 1 cut(s) 740
SfoI GGCGCC 1 cut(s) 145
SinI GGWCC 2 cut(s) 676, 702
SmaI CCCGGG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 4 cut(s) 595, 605, 1091, 1200
SsiI CCGC 9 cut(s) 147, 169, 183, 219, 525, 613, 723, 753, 785
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 3 cut(s) 134, 431, 582
StyD4I CCNGG 4 cut(s) 698, 846, 898, 899
StyI CCWWGG 2 cut(s) 133, 1059
TaaI ACNGT 1 cut(s) 907
TaiI ACGT 5 cut(s) 205, 769, 837, 1027, 1044
TaqI TCGA 2 cut(s) 411, 1065
TasI AATT 4 cut(s) 595, 605, 1091, 1200
TatI WGTACW 2 cut(s) 125, 693
TauI GCSGC 4 cut(s) 149, 171, 185, 788
TfiI GAWTC 2 cut(s) 464, 1030
Tru1I TTAA 4 cut(s) 933, 957, 1005, 1080
Tru9I TTAA 4 cut(s) 933, 957, 1005, 1080
TseFI GTSAC 3 cut(s) 26, 203, 767
TseI GCWGC 2 cut(s) 615, 961
Tsp45I GTSAC 3 cut(s) 26, 203, 767
TspDTI ATGAA 2 cut(s) 512, 957
TspGWI ACGGA 3 cut(s) 224, 668, 786
TspMI CCCGGG 1 cut(s) 899
Vha464I CTTAAG 1 cut(s) 956
VpaK11BI GGWCC 2 cut(s) 676, 702
VspI ATTAAT 1 cut(s) 1005
XapI RAATTY 2 cut(s) 605, 1091
XbaI TCTAGA 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 899
XmaJI CCTAGG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 3 cut(s) 134, 431, 582
ZraI GACGTC 1 cut(s) 835
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.