Rmu_sc0003742.1_g000016

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003742.1
OG0031192
Physical Location & Seq
Reverse (-)
49553 .. 54975
5423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003742.1_g000016.1.cds

Sequence Viewer

Length: 1197 bp
atgagtgagcatcatcaggtagccggagacacaaagcctcctactcactcccaagactacgctccatcgcctcagaaaagaccaaatcgcagtcagtcccgtcaggtgttagcgccgtccgaaagtacacccctaggctcgggcaccgccgatttccgcagacaatgccgccaccaccatgccgctggagtccaacccttacgtcaccaatctggctccgcctccttctttgtccgtcaagagtttggtcgtgtgcccaccacagcttgttccactctcgatggttaccacatacctctagaggagaacaaggcgagcaaaacccactttgaatcgcttcctatggtggtcggaggaggaagaacgaagcctgcaaagggaggaggccgaagcgggcttggggggagagagagagaaactgagtttcccaaaatggaaatctggcattctggccttttttgcaattttcagaaattttcccgcagcagagtcgcaatggcaccaaaagcgagagttccccgaaagacccgaaacccagatctggtccgtggagtgggtaagtactccaggtccaagatgtaccacaagcgcggtctctgggccatcaaggccaaaaatggcggtgccttcccacgtcacgacgccaagccggcgactgaggctccgtcggtgaagcccccgaagttctaccctgctgaggacgtcaagaagcccctggtcaacaagcacaagcccaagcccaccaagctcagggcgagtattactcccgggactgtgttgattatactggctggaaggtttaaggggaagagagttgttttccttaagcagctttcgtctgggttgcttcttgttactgggccattcaagattaatggtgttcctttgagacgtgtgaatcagtcctacgtgattggcacttccaccaaggtcgatatttctggggttaatgtggaaaaatttgatgacaagttttttggaaaggccgtggaaaagaagaagaagaagggggagggagagttttttgaggcagagaaagaggacaagaaagtgttcccacaagagaggaaagatgatcagaagagtgtggatgcttcgttgataaaggccattgaggctgtcccagacttgaagacatacttagctgcaagattctctcttaggtctggcatgaagcctcatgagcttgtcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

398

Amino Acids

44.21

Weight (kDa)

10.26

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031192)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002205.1_g000001 Rmu_sc0003742.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 705
AccB1I GGYRCC 3 cut(s) 143, 499, 623
AccII CGCG 1 cut(s) 591
AciI CCGC 9 cut(s) 147, 157, 169, 183, 219, 393, 481, 591, 621
AcsI RAATTY 2 cut(s) 473, 959
AcyI GRCGYC 2 cut(s) 642, 702
AfaI GTAC 3 cut(s) 127, 563, 581
AfiI CCNNNNNNNGG 6 cut(s) 139, 377, 541, 553, 697, 750
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 3 cut(s) 332, 868, 1132
AjiI CACGTC 2 cut(s) 635, 893
AjnI CCWGG 2 cut(s) 566, 714
AluBI AGCT 5 cut(s) 266, 748, 832, 1145, 1186
AluI AGCT 5 cut(s) 266, 748, 832, 1145, 1186
Alw26I GTCTC 3 cut(s) 21, 599, 883
Ama87I CYCGRG 2 cut(s) 139, 767
AoxI GGCC 7 cut(s) 385, 451, 600, 609, 860, 984, 1107
ApeKI GCWGC 3 cut(s) 483, 829, 1145
ApoI RAATTY 2 cut(s) 473, 959
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 336, 1052
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 2 cut(s) 115, 591
AspS9I GGNCC 4 cut(s) 544, 570, 600, 860
AsuC2I CCSGG 2 cut(s) 768, 769
AsuHPI GGTGA 2 cut(s) 197, 682
AvaI CYCGRG 2 cut(s) 139, 767
AvaII GGWCC 2 cut(s) 544, 570
AvrII CCTAGG 1 cut(s) 133
BaeGI GKGCMC 2 cut(s) 146, 258
BanI GGYRCC 3 cut(s) 143, 499, 623
BbsI GAAGAC 1 cut(s) 1139
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 3 cut(s) 495, 841, 1132
BccI CCATC 3 cut(s) 73, 275, 611
BceAI ACGGC 2 cut(s) 100, 971
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 2 cut(s) 568, 716
BclI TGATCA 1 cut(s) 1075
BcnI CCSGG 2 cut(s) 768, 769
BcoDI GTCTC 3 cut(s) 21, 599, 883
BfaI CTAG 2 cut(s) 134, 299
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 824
BglI GCCNNNNNGGC 3 cut(s) 608, 650, 1115
BglII AGATCT 1 cut(s) 538
BisI GCNGC 5 cut(s) 169, 183, 484, 830, 1146
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 5 cut(s) 170, 184, 485, 831, 1147
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 4 cut(s) 568, 716, 768, 769
Bme18I GGWCC 2 cut(s) 544, 570
BmeT110I CYCGRG 2 cut(s) 139, 767
BmgBI CACGTC 2 cut(s) 635, 893
BmgT120I GGNCC 4 cut(s) 544, 570, 600, 860
BmiI GGNNCC 5 cut(s) 145, 217, 501, 625, 663
BmrFI CCNGG 4 cut(s) 568, 716, 768, 769
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 2 cut(s) 19, 1081
BmuI ACTGGG 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 1139
BplI GAGNNNNNCTC 2 cut(s) 748, 780
BpmI CTGGAG 2 cut(s) 207, 550
Bpu10I CCTNAGC 2 cut(s) 696, 749
BpuMI CCSGG 2 cut(s) 768, 769
BsaAI YACGTR 1 cut(s) 910
BsaHI GRCGYC 2 cut(s) 642, 702
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 6 cut(s) 133, 547, 714, 767, 927, 987
BsaXI ACNNNNNCTCC 6 cut(s) 22, 52, 646, 676, 1004, 1034
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 377, 541, 553, 697, 750
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 2 cut(s) 792, 862
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 2 cut(s) 568, 716
BseDI CCNNGG 6 cut(s) 133, 547, 714, 767, 927, 987
BseGI GGATG 1 cut(s) 1096
BseLI CCNNNNNNNGG 6 cut(s) 139, 377, 541, 553, 697, 750
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 5 cut(s) 86, 411, 648, 687, 763
BseNI ACTGG 2 cut(s) 792, 862
BseRI GAGGAG 3 cut(s) 317, 369, 396
BseSI GKGCMC 2 cut(s) 146, 258
BseXI GCAGC 3 cut(s) 495, 841, 1132
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 7 cut(s) 387, 453, 602, 611, 862, 986, 1109
BshNI GGYRCC 3 cut(s) 143, 499, 623
BsiHKCI CYCGRG 2 cut(s) 139, 767
BsiSI CCGG 3 cut(s) 24, 650, 768
BslFI GGGAC 3 cut(s) 82, 784, 1106
BslI CCNNNNNNNGG 6 cut(s) 139, 377, 541, 553, 697, 750
BsmAI GTCTC 3 cut(s) 21, 599, 883
BsmBI CGTCTC 1 cut(s) 883
BsmFI GGGAC 3 cut(s) 82, 784, 1106
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 7 cut(s) 387, 453, 602, 611, 862, 986, 1109
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 2 cut(s) 139, 767
Bsp1286I GDGCHC 2 cut(s) 146, 258
Bsp143I GATC 2 cut(s) 538, 1075
BspACI CCGC 9 cut(s) 147, 157, 169, 183, 219, 393, 481, 591, 621
BspANI GGCC 7 cut(s) 387, 453, 602, 611, 862, 986, 1109
BspCNI CTCAG 5 cut(s) 85, 412, 649, 688, 762
BspFNI CGCG 1 cut(s) 591
BspHI TCATGA 1 cut(s) 1180
BspLI GGNNCC 5 cut(s) 145, 217, 501, 625, 663
BspT107I GGYRCC 3 cut(s) 143, 499, 623
BspTI CTTAAG 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 649
BsrI ACTGG 2 cut(s) 792, 862
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 6 cut(s) 133, 547, 714, 767, 927, 987
BssMI GATC 2 cut(s) 538, 1075
BssNI GRCGYC 2 cut(s) 642, 702
BssT1I CCWWGG 2 cut(s) 133, 927
Bst2UI CCWGG 2 cut(s) 568, 716
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 2 cut(s) 803, 1076
BstACI GRCGYC 2 cut(s) 642, 702
BstAFI CTTAAG 1 cut(s) 824
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 910
BstC8I GCNNGC 4 cut(s) 316, 372, 395, 651
BstDEI CTNAG 7 cut(s) 72, 420, 657, 696, 749, 1141, 1160
BstDSI CCRYGG 2 cut(s) 547, 987
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 1096
BstFNI CGCG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 591
BstKTI GATC 2 cut(s) 541, 1078
BstMAI GTCTC 3 cut(s) 21, 599, 883
BstMBI GATC 2 cut(s) 538, 1075
BstMWI GCNNNNNNNGC 9 cut(s) 165, 459, 506, 608, 650, 659, 745, 1115, 1183
BstNI CCWGG 2 cut(s) 568, 716
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 4 cut(s) 566, 714, 766, 767
BstSLI GKGCMC 2 cut(s) 146, 258
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 3 cut(s) 495, 841, 1132
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 7 cut(s) 387, 453, 602, 611, 862, 986, 1109
BtgI CCRYGG 2 cut(s) 547, 987
BtgZI GCGATG 1 cut(s) 51
BtrI CACGTC 2 cut(s) 635, 893
BtsCI GGATG 1 cut(s) 1096
Cac8I GCNNGC 4 cut(s) 316, 372, 395, 651
CciI TCATGA 1 cut(s) 1180
CfoI GCGC 2 cut(s) 115, 591
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 4 cut(s) 544, 570, 600, 860
Cfr9I CCCGGG 1 cut(s) 767
CseI GACGC 1 cut(s) 650
Csp6I GTAC 3 cut(s) 126, 562, 580
CviAII CATG 3 cut(s) 179, 1171, 1181
CviQI GTAC 3 cut(s) 126, 562, 580
DdeI CTNAG 7 cut(s) 72, 420, 657, 696, 749, 1141, 1160
DpnI GATC 2 cut(s) 540, 1077
DpnII GATC 2 cut(s) 538, 1075
Eam1104I CTCTTC 2 cut(s) 803, 1076
EarI CTCTTC 2 cut(s) 803, 1076
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 133, 927
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 2 cut(s) 544, 570
Eco88I CYCGRG 2 cut(s) 139, 767
Eco91I GGTNACC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 566, 714
EcoT14I CCWWGG 2 cut(s) 133, 927
ErhI CCWWGG 2 cut(s) 133, 927
Esp3I CGTCTC 1 cut(s) 883
FaeI CATG 3 cut(s) 182, 1174, 1184
FaiI YATR 7 cut(s) 180, 293, 344, 785, 1138, 1172, 1182
FalI AAGNNNNNCTT 2 cut(s) 1124, 1156
FaqI GGGAC 3 cut(s) 82, 784, 1106
FatI CATG 3 cut(s) 178, 1170, 1180
FauI CCCGC 2 cut(s) 386, 488
FbaI TGATCA 1 cut(s) 1075
Fnu4HI GCNGC 5 cut(s) 169, 183, 484, 830, 1146
FokI GGATG 1 cut(s) 1103
Fsp4HI GCNGC 5 cut(s) 169, 183, 484, 830, 1146
FspBI CTAG 2 cut(s) 134, 299
GlaI GCGC 2 cut(s) 114, 590
GluI GCNGC 5 cut(s) 169, 183, 484, 830, 1146
GsuI CTGGAG 2 cut(s) 207, 550
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 7 cut(s) 387, 453, 602, 611, 862, 986, 1109
HapII CCGG 3 cut(s) 24, 650, 768
HgaI GACGC 1 cut(s) 650
HhaI GCGC 2 cut(s) 115, 591
Hin1I GRCGYC 2 cut(s) 642, 702
Hin1II CATG 3 cut(s) 182, 1174, 1184
Hin6I GCGC 2 cut(s) 113, 589
HinP1I GCGC 2 cut(s) 113, 589
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 5 cut(s) 189, 332, 489, 898, 1152
HpaII CCGG 3 cut(s) 24, 650, 768
HphI GGTGA 2 cut(s) 197, 682
Hpy166II GTNNAC 2 cut(s) 128, 721
Hpy188I TCNGA 5 cut(s) 75, 121, 353, 471, 1080
Hpy188III TCNNGA 7 cut(s) 239, 278, 299, 638, 706, 868, 1181
Hpy8I GTNNAC 2 cut(s) 128, 721
Hpy99I CGWCG 2 cut(s) 644, 670
HpyAV CCTTC 4 cut(s) 235, 637, 789, 1000
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 5 cut(s) 202, 634, 702, 892, 909
HpyCH4V TGCA 3 cut(s) 374, 462, 1148
HpyF10VI GCNNNNNNNGC 9 cut(s) 165, 459, 506, 608, 650, 659, 745, 1115, 1183
HpyF3I CTNAG 7 cut(s) 72, 420, 657, 696, 749, 1141, 1160
HpySE526I ACGT 5 cut(s) 202, 634, 702, 892, 909
Hsp92I GRCGYC 2 cut(s) 642, 702
Hsp92II CATG 3 cut(s) 182, 1174, 1184
HspAI GCGC 2 cut(s) 113, 589
KroI GCCGGC 1 cut(s) 649
KroNI GCCGGC 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 2 cut(s) 538, 1075
LmnI GCTCC 3 cut(s) 67, 221, 667
Lsp1109I GCAGC 3 cut(s) 495, 841, 1132
LweI GCATC 2 cut(s) 19, 1081
MaeI CTAG 2 cut(s) 134, 299
MaeII ACGT 5 cut(s) 202, 634, 702, 892, 909
MaeIII GTNAC 4 cut(s) 203, 284, 635, 853
MalI GATC 2 cut(s) 540, 1077
MboI GATC 2 cut(s) 538, 1075
MboII GAAGA 7 cut(s) 372, 820, 1009, 1012, 1015, 1093, 1144
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 146, 258
MluCI AATT 3 cut(s) 463, 473, 959
MlyI GAGTC 2 cut(s) 198, 498
MmeI TCCRAC 2 cut(s) 217, 331
MroNI GCCGGC 1 cut(s) 649
MroXI GAANNNNTTC 2 cut(s) 336, 1052
MseI TTAA 4 cut(s) 801, 825, 873, 948
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 185
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 3 cut(s) 24, 650, 768
MspR9I CCNGG 4 cut(s) 568, 716, 768, 769
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 568, 716
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 9 cut(s) 165, 459, 506, 608, 650, 659, 745, 1115, 1183
NaeI GCCGGC 1 cut(s) 651
NciI CCSGG 2 cut(s) 768, 769
NdeII GATC 2 cut(s) 538, 1075
NgoMIV GCCGGC 1 cut(s) 649
NlaIII CATG 3 cut(s) 182, 1174, 1184
NlaIV GGNNCC 5 cut(s) 145, 217, 501, 625, 663
NmuCI GTSAC 2 cut(s) 203, 635
PagI TCATGA 1 cut(s) 1180
PctI GAATGC 1 cut(s) 445
PdiI GCCGGC 1 cut(s) 651
PdmI GAANNNNTTC 2 cut(s) 336, 1052
PfeI GAWTC 3 cut(s) 332, 898, 1152
PkrI GCNGC 5 cut(s) 170, 184, 485, 831, 1147
PleI GAGTC 2 cut(s) 197, 497
PpsI GAGTC 2 cut(s) 197, 497
Ppu21I YACGTR 1 cut(s) 910
PshBI ATTAAT 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 566, 714
PspEI GGTNACC 1 cut(s) 284
PspGI CCWGG 2 cut(s) 566, 714
PspN4I GGNNCC 5 cut(s) 145, 217, 501, 625, 663
PspPI GGNCC 4 cut(s) 544, 570, 600, 860
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 3 cut(s) 127, 563, 581
RsaNI GTAC 3 cut(s) 126, 562, 580
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 4 cut(s) 801, 825, 873, 948
SatI GCNGC 5 cut(s) 169, 183, 484, 830, 1146
Sau3AI GATC 2 cut(s) 538, 1075
Sau96I GGNCC 4 cut(s) 544, 570, 600, 860
ScaI AGTACT 1 cut(s) 563
SchI GAGTC 2 cut(s) 198, 498
ScrFI CCNGG 4 cut(s) 568, 716, 768, 769
SduI GDGCHC 2 cut(s) 146, 258
SfaNI GCATC 2 cut(s) 19, 1081
SfiI GGCCNNNNNGGCC 1 cut(s) 608
SinI GGWCC 2 cut(s) 544, 570
SmaI CCCGGG 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
Sse9I AATT 3 cut(s) 463, 473, 959
SsiI CCGC 9 cut(s) 147, 157, 169, 183, 219, 393, 481, 591, 621
SspMI CTAG 2 cut(s) 134, 299
StyD4I CCNGG 4 cut(s) 566, 714, 766, 767
StyI CCWWGG 2 cut(s) 133, 927
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 5 cut(s) 205, 637, 705, 895, 912
TaqI TCGA 2 cut(s) 279, 933
TasI AATT 3 cut(s) 463, 473, 959
TatI WGTACW 2 cut(s) 125, 561
TauI GCSGC 2 cut(s) 171, 185
TfiI GAWTC 3 cut(s) 332, 898, 1152
Tru1I TTAA 4 cut(s) 801, 825, 873, 948
Tru9I TTAA 4 cut(s) 801, 825, 873, 948
TseFI GTSAC 2 cut(s) 203, 635
TseI GCWGC 3 cut(s) 483, 829, 1145
Tsp45I GTSAC 2 cut(s) 203, 635
TspDTI ATGAA 1 cut(s) 1187
TspGWI ACGGA 3 cut(s) 224, 536, 654
TspMI CCCGGG 1 cut(s) 767
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 2 cut(s) 544, 570
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 2 cut(s) 473, 959
XbaI TCTAGA 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 767
XmaJI CCTAGG 1 cut(s) 133
XmnI GAANNNNTTC 2 cut(s) 336, 1052
XspI CTAG 2 cut(s) 134, 299
ZraI GACGTC 1 cut(s) 703
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.