Rmu_sc0002212.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002212.1
OG0031194
Physical Location & Seq
Reverse (-)
63162 .. 63836
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002212.1_g000014.1.cds

Sequence Viewer

Length: 531 bp
atgggtagcgctagaagagcgttttggcaatgtccaaattccctcctccctgacttgaaggttcaatggaacaatctgtgctttgctgatttcaagtctattgctgaatataattcagaagctcttcgcctacagtccatgttaaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcaaccattgtggtatcaaagcaataccgcactgaagtcaatgttggacggatcacggggtttcatcagcttatcaatctcatatctgtagctgagaaacatgataacatacttgaaggaaaccgcaagtttggtgaggatacacgtggtggcaatgccacacgtgggagagggggtcgtggcaaccttggccgtggtggtggcgccatggcccgtggtcgtggcaccatgggtcgtggtggtggcaccaaccctcctagggaacgcccacaacgtgcacctcaattgacgggaggcaaccacaatgatgtgtgtcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

176

Amino Acids

19.34

Weight (kDa)

10.03

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031194)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002212.1_g000014 Rmu_sc0020798.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 413, 434, 455
AciI CCGC 2 cut(s) 238, 334
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 264
AcvI CACGTG 2 cut(s) 356, 374
AcyI GRCGYC 1 cut(s) 414
AdeI CACNNNGTG 2 cut(s) 359, 485
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 144, 375, 469
AflIII ACRYGT 2 cut(s) 353, 371
AgsI TTSAA 5 cut(s) 58, 65, 94, 213, 326
AhdI GACNNNNNGTC 1 cut(s) 161
AjuI GAANNNNNNNTTGG 4 cut(s) 7, 39, 237, 269
AluBI AGCT 4 cut(s) 122, 178, 280, 302
AluI AGCT 4 cut(s) 122, 178, 280, 302
Alw21I GWGCWC 1 cut(s) 490
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 1 cut(s) 269
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 2 cut(s) 400, 420
ApaLI GTGCAC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 123
AspA2I CCTAGG 1 cut(s) 467
AspLEI GCGC 2 cut(s) 11, 416
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 356
AvrII CCTAGG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 490
BanI GGYRCC 3 cut(s) 413, 434, 455
BbrPI CACGTG 2 cut(s) 356, 374
Bbv12I GWGCWC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 387
BciVI GTATCC 1 cut(s) 343
BfaI CTAG 2 cut(s) 12, 468
BfmI CTRYAG 2 cut(s) 131, 297
BfoI RGCGCY 2 cut(s) 12, 417
BfuI GTATCC 1 cut(s) 343
BlnI CCTAGG 1 cut(s) 467
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 3 cut(s) 415, 436, 457
BsaAI YACGTR 2 cut(s) 356, 374
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 6 cut(s) 397, 403, 417, 424, 438, 467
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 448, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 375, 469
Bse3DI GCAATG 2 cut(s) 35, 370
BseDI CCNNGG 6 cut(s) 397, 403, 417, 424, 438, 467
BseLI CCNNNNNNNGG 3 cut(s) 144, 375, 469
BseMI GCAATG 2 cut(s) 35, 370
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 490
BshFI GGCC 2 cut(s) 402, 422
BshNI GGYRCC 3 cut(s) 413, 434, 455
BsiHKAI GWGCWC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 144, 375, 469
BsnI GGCC 2 cut(s) 402, 422
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 1 cut(s) 261
Bsp19I CCATGG 2 cut(s) 417, 438
BspACI CCGC 2 cut(s) 238, 334
BspANI GGCC 2 cut(s) 402, 422
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 415, 436, 457
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 2 cut(s) 10, 129
BspT107I GGYRCC 3 cut(s) 413, 434, 455
BsrDI GCAATG 2 cut(s) 35, 370
BssECI CCNNGG 6 cut(s) 397, 403, 417, 424, 438, 467
BssMI GATC 1 cut(s) 261
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 4 cut(s) 397, 417, 438, 467
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 10, 129
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 2 cut(s) 356, 374
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 4 cut(s) 403, 417, 424, 438
BstH2I RGCGCY 2 cut(s) 12, 417
BstHHI GCGC 2 cut(s) 11, 416
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 17, 399
BstSFI CTRYAG 2 cut(s) 131, 297
BstSLI GKGCMC 1 cut(s) 490
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 2 cut(s) 402, 422
BtgI CCRYGG 4 cut(s) 403, 417, 424, 438
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 2 cut(s) 11, 416
Cfr13I GGNCC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 4 cut(s) 139, 311, 418, 439
CviJI RGCY 6 cut(s) 122, 178, 280, 302, 402, 422
CviKI_1 RGCY 6 cut(s) 122, 178, 280, 302, 402, 422
DdeI CTNAG 1 cut(s) 303
DinI GGCGCC 1 cut(s) 415
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DraIII CACNNNGTG 2 cut(s) 359, 485
DriI GACNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 10, 129
Eam1105I GACNNNNNGTC 1 cut(s) 161
EarI CTCTTC 2 cut(s) 10, 129
Eco130I CCWWGG 4 cut(s) 397, 417, 438, 467
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 264
Eco72I CACGTG 2 cut(s) 356, 374
EcoT14I CCWWGG 4 cut(s) 397, 417, 438, 467
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 4 cut(s) 397, 417, 438, 467
FaeI CATG 4 cut(s) 142, 314, 421, 442
FaiI YATR 7 cut(s) 111, 140, 293, 312, 320, 419, 440
FatI CATG 4 cut(s) 138, 310, 417, 438
FspBI CTAG 2 cut(s) 12, 468
GlaI GCGC 2 cut(s) 10, 415
HaeII RGCGCY 2 cut(s) 12, 417
HaeIII GGCC 2 cut(s) 402, 422
HhaI GCGC 2 cut(s) 11, 416
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 4 cut(s) 142, 314, 421, 442
Hin6I GCGC 2 cut(s) 9, 414
HinP1I GCGC 2 cut(s) 9, 414
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 155, 488
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 155, 488
HpyAV CCTTC 3 cut(s) 52, 211, 320
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 3 cut(s) 355, 373, 484
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 399
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 3 cut(s) 355, 373, 484
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 4 cut(s) 142, 314, 421, 442
HspAI GCGC 2 cut(s) 9, 414
KasI GGCGCC 1 cut(s) 413
Kzo9I GATC 1 cut(s) 261
LguI GCTCTTC 2 cut(s) 10, 129
LpnPI CCDG 2 cut(s) 63, 174
MaeI CTAG 2 cut(s) 12, 468
MaeII ACGT 3 cut(s) 355, 373, 484
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 2 cut(s) 27, 116
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 4 cut(s) 37, 112, 180, 494
Mly113I GGCGCC 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 7 cut(s) 53, 56, 340, 374, 474, 497, 501
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 516
MunI CAATTG 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 17, 399
NarI GGCGCC 1 cut(s) 414
NcoI CCATGG 2 cut(s) 417, 438
NdeII GATC 1 cut(s) 261
NlaIII CATG 4 cut(s) 142, 314, 421, 442
NlaIV GGNNCC 3 cut(s) 415, 436, 457
NmuCI GTSAC 1 cut(s) 163
PciSI GCTCTTC 2 cut(s) 10, 129
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 123
PluTI GGCGCC 1 cut(s) 417
PmaCI CACGTG 2 cut(s) 356, 374
PmlI CACGTG 2 cut(s) 356, 374
Ppu21I YACGTR 2 cut(s) 356, 374
PspCI CACGTG 2 cut(s) 356, 374
PspN4I GGNNCC 3 cut(s) 415, 436, 457
PspPI GGNCC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 516
SapI GCTCTTC 2 cut(s) 10, 129
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 421
SduI GDGCHC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 131, 297
SfoI GGCGCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 516
Sse9I AATT 4 cut(s) 37, 112, 180, 494
SsiI CCGC 2 cut(s) 238, 334
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 2 cut(s) 12, 468
StyI CCWWGG 4 cut(s) 397, 417, 438, 467
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 3 cut(s) 358, 376, 487
TasI AATT 4 cut(s) 37, 112, 180, 494
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 486
XapI RAATTY 1 cut(s) 37
XmaJI CCTAGG 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 2 cut(s) 12, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.