Rmu_sc0020798.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020798.1
OG0031194
Physical Location & Seq
Forward (+)
1 .. 875
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020798.1_g000001.1.cds

Sequence Viewer

Length: 731 bp
ggattaccacagttgggtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggcacctaacccagatcttgtgttcatccgaacatctataaagcatgctaaagcagttatcttgatgcgacgccatatgaagaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgacttcaagtctgttgctgaatataattcagaggctcttcgcttacaatccatgttgagattctgtggacaacctgtcacagagcaagagctaattgagaagactctctccaccttccccatttcagccattgtggtatcaaagcaataccgtattgaagtcaatactggacagattacgaggtttcatcagtttatcaatatcatatctgtagctgagaaacatgataacatactcgaaggaaaccgcaagtttggagcggatacacgtggtggcaatgccacacgtgggagagggggtcgtggcaaccctagccgtggtagtggagccatagctcgtggtggtggcgccatgggtcatggtagaggcgccaatcctcctagggaacgcccacaatgtgcacaacgtgcacctcaattgaagggcggcaaccacaatgatatgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

243

Amino Acids

27.22

Weight (kDa)

9.95

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031194)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002212.1_g000014 Rmu_sc0020798.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 71, 633, 654
AccBSI CCGCTC 1 cut(s) 546
AciI CCGC 3 cut(s) 533, 546, 712
AcvI CACGTG 2 cut(s) 555, 573
AcyI GRCGYC 3 cut(s) 140, 634, 655
AdeI CACNNNGTG 3 cut(s) 558, 684, 693
AfeI AGCGCT 2 cut(s) 208, 219
AfiI CCNNNNNNNGG 3 cut(s) 14, 574, 603
AflIII ACRYGT 2 cut(s) 552, 570
AgsI TTSAA 6 cut(s) 46, 257, 264, 293, 444, 707
AhdI GACNNNNNGTC 2 cut(s) 293, 360
AjnI CCWGG 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 4 cut(s) 197, 377, 501, 621
AluI AGCT 4 cut(s) 197, 377, 501, 621
Alw21I GWGCWC 2 cut(s) 689, 698
Alw44I GTGCAC 2 cut(s) 685, 694
Aor51HI AGCGCT 2 cut(s) 208, 219
ApaLI GTGCAC 2 cut(s) 685, 694
AspA2I CCTAGG 1 cut(s) 666
AspLEI GCGC 5 cut(s) 209, 220, 280, 636, 657
AvrII CCTAGG 1 cut(s) 666
BaeGI GKGCMC 2 cut(s) 689, 698
BanI GGYRCC 3 cut(s) 71, 633, 654
BauI CACGAG 1 cut(s) 622
BbrPI CACGTG 2 cut(s) 555, 573
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 689, 698
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 1 cut(s) 69
BciVI GTATCC 1 cut(s) 542
BfaI CTAG 3 cut(s) 210, 598, 667
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 4 cut(s) 210, 221, 637, 658
BfuI GTATCC 1 cut(s) 542
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 713
BlnI CCTAGG 1 cut(s) 666
BlsI GCNGC 1 cut(s) 714
Bme1390I CCNGG 1 cut(s) 69
BmeRI GACNNNNNGTC 2 cut(s) 293, 360
BmiI GGNNCC 4 cut(s) 73, 614, 635, 656
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 124, 176
BpiI GAAGAC 1 cut(s) 393
BsaAI YACGTR 2 cut(s) 555, 573
BsaHI GRCGYC 3 cut(s) 140, 634, 655
BsaJI CCNNGG 3 cut(s) 602, 637, 666
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 569, 599
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 574, 603
Bse1I ACTGG 1 cut(s) 458
Bse3DI GCAATG 2 cut(s) 233, 569
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 602, 637, 666
BseGI GGATG 2 cut(s) 94, 191
BseLI CCNNNNNNNGG 3 cut(s) 14, 574, 603
BseMI GCAATG 2 cut(s) 233, 569
BseMII CTCAG 2 cut(s) 173, 493
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 2 cut(s) 689, 698
BshNI GGYRCC 3 cut(s) 71, 633, 654
BsiHKAI GWGCWC 2 cut(s) 689, 698
BslI CCNNNNNNNGG 3 cut(s) 14, 574, 603
Bsp1286I GDGCHC 2 cut(s) 689, 698
Bsp143I GATC 2 cut(s) 83, 178
Bsp19I CCATGG 1 cut(s) 637
BspACI CCGC 3 cut(s) 533, 546, 712
BspCNI CTCAG 2 cut(s) 172, 494
BspLI GGNNCC 4 cut(s) 73, 614, 635, 656
BspQI GCTCTTC 2 cut(s) 208, 328
BspT107I GGYRCC 3 cut(s) 71, 633, 654
BsrBI CCGCTC 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 233, 569
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 602, 637, 666
BssMI GATC 2 cut(s) 83, 178
BssNI GRCGYC 3 cut(s) 140, 634, 655
BssSI CACGAG 1 cut(s) 622
BssT1I CCWWGG 2 cut(s) 637, 666
Bst2BI CACGAG 1 cut(s) 622
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 12, 438
Bst6I CTCTTC 2 cut(s) 208, 328
BstACI GRCGYC 3 cut(s) 140, 634, 655
BstAPI GCANNNNNTGC 1 cut(s) 693
BstBAI YACGTR 2 cut(s) 555, 573
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 159, 502
BstDSI CCRYGG 2 cut(s) 602, 637
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 2 cut(s) 94, 191
BstH2I RGCGCY 4 cut(s) 210, 221, 637, 658
BstHHI GCGC 5 cut(s) 209, 220, 280, 636, 657
BstKTI GATC 2 cut(s) 86, 181
BstMBI GATC 2 cut(s) 83, 178
BstMWI GCNNNNNNNGC 3 cut(s) 215, 598, 693
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 2 cut(s) 689, 698
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuI GTATCC 1 cut(s) 542
BtgI CCRYGG 2 cut(s) 602, 637
BtsCI GGATG 2 cut(s) 94, 191
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 5 cut(s) 209, 220, 280, 636, 657
CseI GACGC 1 cut(s) 148
CviAII CATG 5 cut(s) 114, 338, 510, 638, 645
CviJI RGCY 8 cut(s) 197, 321, 377, 414, 501, 601, 615, 621
CviKI_1 RGCY 8 cut(s) 197, 321, 377, 414, 501, 601, 615, 621
DdeI CTNAG 2 cut(s) 159, 502
DinI GGCGCC 2 cut(s) 635, 656
DpnI GATC 2 cut(s) 85, 180
DpnII GATC 2 cut(s) 83, 178
DraIII CACNNNGTG 3 cut(s) 558, 684, 693
DriI GACNNNNNGTC 2 cut(s) 293, 360
Eam1104I CTCTTC 2 cut(s) 208, 328
Eam1105I GACNNNNNGTC 2 cut(s) 293, 360
EarI CTCTTC 2 cut(s) 208, 328
Eco130I CCWWGG 2 cut(s) 637, 666
Eco47III AGCGCT 2 cut(s) 208, 219
Eco72I CACGTG 2 cut(s) 555, 573
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 637, 666
EgeI GGCGCC 2 cut(s) 635, 656
EheI GGCGCC 2 cut(s) 635, 656
ErhI CCWWGG 2 cut(s) 637, 666
FaeI CATG 5 cut(s) 117, 341, 513, 641, 648
FatI CATG 5 cut(s) 113, 337, 509, 637, 644
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 713
FokI GGATG 2 cut(s) 81, 198
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 3 cut(s) 210, 598, 667
GlaI GCGC 5 cut(s) 208, 219, 279, 635, 656
GluI GCNGC 1 cut(s) 713
HaeII RGCGCY 4 cut(s) 210, 221, 637, 658
HgaI GACGC 1 cut(s) 148
HhaI GCGC 5 cut(s) 209, 220, 280, 636, 657
Hin1I GRCGYC 3 cut(s) 140, 634, 655
Hin1II CATG 5 cut(s) 117, 341, 513, 641, 648
Hin6I GCGC 5 cut(s) 207, 218, 278, 634, 655
HinP1I GCGC 5 cut(s) 207, 218, 278, 634, 655
HinfI GANTC 3 cut(s) 237, 346, 389
Hpy166II GTNNAC 3 cut(s) 354, 687, 696
Hpy188I TCNGA 3 cut(s) 99, 162, 317
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 354, 687, 696
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 5 cut(s) 146, 251, 410, 519, 701
HpyCH4III ACNGT 2 cut(s) 12, 438
HpyCH4IV ACGT 3 cut(s) 554, 572, 692
HpyCH4V TGCA 3 cut(s) 189, 687, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 598, 693
HpyF3I CTNAG 2 cut(s) 159, 502
HpySE526I ACGT 3 cut(s) 554, 572, 692
Hsp92I GRCGYC 3 cut(s) 140, 634, 655
Hsp92II CATG 5 cut(s) 117, 341, 513, 641, 648
HspAI GCGC 5 cut(s) 207, 218, 278, 634, 655
KasI GGCGCC 2 cut(s) 633, 654
Kzo9I GATC 2 cut(s) 83, 178
LguI GCTCTTC 2 cut(s) 208, 328
LmnI GCTCC 2 cut(s) 543, 612
LpnPI CCDG 6 cut(s) 54, 81, 94, 262, 373, 439
LweI GCATC 2 cut(s) 124, 176
MaeI CTAG 3 cut(s) 210, 598, 667
MaeII ACGT 3 cut(s) 554, 572, 692
MaeIII GTNAC 2 cut(s) 17, 362
MalI GATC 2 cut(s) 85, 180
MbiI CCGCTC 1 cut(s) 546
MboI GATC 2 cut(s) 83, 178
MboII GAAGA 4 cut(s) 161, 225, 315, 398
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 2 cut(s) 689, 698
MluCI AATT 3 cut(s) 311, 379, 702
Mly113I GGCGCC 2 cut(s) 634, 655
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 9 cut(s) 48, 252, 255, 311, 460, 573, 645, 673, 709
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 702
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 215, 598, 693
NarI GGCGCC 2 cut(s) 634, 655
NcoI CCATGG 1 cut(s) 637
NdeI CATATG 1 cut(s) 145
NdeII GATC 2 cut(s) 83, 178
NlaIII CATG 5 cut(s) 117, 341, 513, 641, 648
NlaIV GGNNCC 4 cut(s) 73, 614, 635, 656
NmuCI GTSAC 1 cut(s) 362
NspI RCATGY 1 cut(s) 117
PaeI GCATGC 1 cut(s) 117
PciSI GCTCTTC 2 cut(s) 208, 328
PfeI GAWTC 2 cut(s) 237, 346
PkrI GCNGC 1 cut(s) 714
PleI GAGTC 1 cut(s) 383
PluTI GGCGCC 2 cut(s) 637, 658
PmaCI CACGTG 2 cut(s) 555, 573
PmlI CACGTG 2 cut(s) 555, 573
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 2 cut(s) 555, 573
Psp6I CCWGG 1 cut(s) 67
PspCI CACGTG 2 cut(s) 555, 573
PspEI GGTNACC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 4 cut(s) 73, 614, 635, 656
PsuI RGATCY 1 cut(s) 83
SapI GCTCTTC 2 cut(s) 208, 328
SatI GCNGC 1 cut(s) 713
Sau3AI GATC 2 cut(s) 83, 178
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 689, 698
SfaNI GCATC 2 cut(s) 124, 176
SfcI CTRYAG 1 cut(s) 496
SfoI GGCGCC 2 cut(s) 635, 656
SphI GCATGC 1 cut(s) 117
Sse9I AATT 3 cut(s) 311, 379, 702
SsiI CCGC 3 cut(s) 533, 546, 712
SspDI GGCGCC 2 cut(s) 633, 654
SspI AATATT 1 cut(s) 55
SspMI CTAG 3 cut(s) 210, 598, 667
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 637, 666
TaaI ACNGT 2 cut(s) 12, 438
TaiI ACGT 3 cut(s) 557, 575, 695
TaqI TCGA 2 cut(s) 177, 523
TasI AATT 3 cut(s) 311, 379, 702
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 2 cut(s) 237, 346
TseFI GTSAC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 3 cut(s) 83, 162, 462
VneI GTGCAC 2 cut(s) 685, 694
XceI RCATGY 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 666
XspI CTAG 3 cut(s) 210, 598, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.