Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0031195

Physical Location & Seq

Genomic Coordinates Reverse (-)

44650 .. 49266

Gene Structure 4617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgggtttgttggaagtgaagcatggtttgctccagatagctgagtccttggactttctccataacaatgcgcagcttattcatcgagctatatcacccgagaatgtgtttattacatcaagtggagcttggaagcttggtggatttggttttgcaatctcaacagatcaggcctcaggcaatatgaatgttccggaatttcattatgcagagtatgatgttgaggactctgtacttccacttcagccatcactgaattacactgctcctgaacttgctaggagtaaagcatcttctgccggatgttcttctgatattttcagctttggatgtcttgcctaccacttgattgcacgcaaacctttgtttgactgccacaataatgtcaagatgtacatgaataccttaagttatttatctagtgaagccttctcctctattcctcctgagttagttcctgacttgcaaaggatgatctctacaaatgagtctttcaggccatcagcaattgattttacaggttctccatttttccgggatgacactaggttgcgtgctcttcgttttctcgaccttgaaagggataacatgcagaaatctgagttcctaaaagcattgtctgatatgtggaaagattttgatgctcgtgtattgcgctataaggttggtgtagccatgagtaatgatgggaatatcattgatgttgagtcgggggaagaagacgattcttcagtgcaagattgcaacatggagacagaagacattgaaaccaccgaagaaacatatggagcagatggcccttttgagtacaatgggaaaaattttcgtgagctgacggtcaaggactttgatgggacttatttcaaaactattgatgatgctgaaaagttctatgaaatttattctgctgcacttgggttccgtttaaggagacaaaagtgtgatcggggcctgtctggcactgtcctaagaagaatgtggtcgtccacccaggcacagcacgaggagagtgcgctaggtaagtatgacaggttttgtgaatatattccccgaatggacaagaccctgaggaaaatgagaaataatattagtgtggatgaccttaaatgcgagaactcaaagccagtcattattactcacatgcggtctttggagcagcagatagctgagatcttcactcatgacatctacttgctgataatgcaccagatagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0006810 GO:0006897 GO:0006898 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008333 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010604 GO:0010646 GO:0010648 GO:0016055 GO:0016192 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0030100 GO:0030111 GO:0030178 GO:0031323 GO:0031325 GO:0031623 GO:0032879 GO:0043112 GO:0043170 GO:0044237 GO:0044260 GO:0045807 GO:0046907 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060070 GO:0060255 GO:0060627 GO:0060828 GO:0065007 GO:0071704 GO:0090090 GO:0098657 GO:0198738 GO:1905114 GO:2000286 GO:2000369 GO:2000370

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Pkinase

Protein Analysis

405

Amino Acids

46.21

Weight (kDa)

4.96

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031195)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002219.1_g000012 Rmu_sc0016098.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	1 cut(s)	1144
AcsI	RAATTY	3 cut(s)	197, 820, 897
AcuI	CTGAAG	2 cut(s)	227, 714
AfaI	GTAC	3 cut(s)	234, 395, 809
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflII	CTTAAG	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	578, 767, 865
AjnI	CCWGG	1 cut(s)	990
AluBI	AGCT	8 cut(s)	41, 76, 89, 128, 136, 324, 832, 1166
AluI	AGCT	8 cut(s)	41, 76, 89, 128, 136, 324, 832, 1166
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	746, 925
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	4 cut(s)	171, 497, 796, 949
ApeKI	GCWGC	3 cut(s)	73, 908, 1156
ApoI	RAATTY	3 cut(s)	197, 820, 897
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	3 cut(s)	73, 657, 1015
AspS9I	GGNCC	2 cut(s)	797, 949
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	98
AxyI	CCTNAGG	2 cut(s)	175, 1067
BarI	GAAGNNNNNNTAC	4 cut(s)	225, 257, 277, 309
BauI	CACGAG	2 cut(s)	645, 1001
BbsI	GAAGAC	2 cut(s)	726, 765
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	85, 895, 1168
BccI	CCATC	5 cut(s)	256, 508, 680, 788, 845
BcgI	CGANNNNNNTGC	2 cut(s)	992, 1026
BciT130I	CCWGG	1 cut(s)	992
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	746, 925
BfaI	CTAG	4 cut(s)	279, 420, 546, 1016
BfrI	CTTAAG	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	957
BglII	AGATCT	1 cut(s)	1170
BisI	GCNGC	3 cut(s)	74, 909, 1157
BlsI	GCNGC	3 cut(s)	75, 910, 1158
Bme1390I	CCNGG	2 cut(s)	536, 992
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	797, 949
BmiI	GGNNCC	2 cut(s)	920, 950
BmrFI	CCNGG	2 cut(s)	536, 992
BmsI	GCATC	3 cut(s)	299, 631, 868
BpiI	GAAGAC	2 cut(s)	726, 765
BpmI	CTGGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	48, 990
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	1124
Bse21I	CCTNAGG	2 cut(s)	175, 1067
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	992
BseDI	CCNNGG	2 cut(s)	48, 990
BseGI	GGATG	5 cut(s)	308, 335, 477, 544, 1102
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	6 cut(s)	33, 189, 438, 591, 1058, 1158
BseNI	ACTGG	1 cut(s)	1124
BseRI	GAGGAG	2 cut(s)	424, 1019
BseXI	GCAGC	3 cut(s)	85, 895, 1168
BsgI	GTGCAG	1 cut(s)	894
BshFI	GGCC	4 cut(s)	173, 499, 798, 951
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	194, 300, 535
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	746, 925
BsmFI	GGGAC	1 cut(s)	868
BsnI	GGCC	4 cut(s)	173, 499, 798, 951
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	4 cut(s)	166, 474, 943, 1170
BspACI	CCGC	1 cut(s)	1144
BspANI	GGCC	4 cut(s)	173, 499, 798, 951
BspCNI	CTCAG	6 cut(s)	34, 188, 439, 592, 1059, 1159
BspEI	TCCGGA	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	1180
BspLI	GGNNCC	2 cut(s)	920, 950
BspQI	GCTCTTC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	1124
BssECI	CCNNGG	2 cut(s)	48, 990
BssMI	GATC	4 cut(s)	166, 474, 943, 1170
BssSI	CACGAG	2 cut(s)	645, 1001
BssT1I	CCWWGG	1 cut(s)	48
Bst2BI	CACGAG	2 cut(s)	645, 1001
Bst2UI	CCWGG	1 cut(s)	992
Bst4CI	ACNGT	2 cut(s)	838, 964
Bst6I	CTCTTC	1 cut(s)	564
BstAFI	CTTAAG	1 cut(s)	406
BstAPI	GCANNNNNTGC	2 cut(s)	28, 296
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	355, 555
BstDEI	CTNAG	7 cut(s)	42, 175, 447, 600, 968, 1067, 1167
BstF5I	GGATG	5 cut(s)	308, 335, 477, 544, 1102
BstHHI	GCGC	3 cut(s)	73, 657, 1015
BstKTI	GATC	4 cut(s)	169, 477, 946, 1173
BstMAI	GTCTC	2 cut(s)	746, 925
BstMBI	GATC	4 cut(s)	166, 474, 943, 1170
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 296, 957, 1201
BstNI	CCWGG	1 cut(s)	992
BstNSI	RCATGY	2 cut(s)	592, 1144
BstSCI	CCNGG	2 cut(s)	534, 990
BstV1I	GCAGC	3 cut(s)	85, 895, 1168
BstV2I	GAAGAC	2 cut(s)	726, 765
BstX2I	RGATCY	1 cut(s)	1170
BstYI	RGATCY	1 cut(s)	1170
Bsu36I	CCTNAGG	2 cut(s)	175, 1067
BsuRI	GGCC	4 cut(s)	173, 499, 798, 951
BtsCI	GGATG	5 cut(s)	308, 335, 477, 544, 1102
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	4 cut(s)	251, 261, 738, 960
Cac8I	GCNNGC	2 cut(s)	355, 555
CciI	TCATGA	1 cut(s)	1180
CfoI	GCGC	3 cut(s)	73, 657, 1015
Cfr13I	GGNCC	2 cut(s)	797, 949
Csp6I	GTAC	3 cut(s)	233, 394, 808
CviAII	CATG	7 cut(s)	23, 397, 589, 676, 748, 1141, 1181
CviQI	GTAC	3 cut(s)	233, 394, 808
DdeI	CTNAG	7 cut(s)	42, 175, 447, 600, 968, 1067, 1167
DpnI	GATC	4 cut(s)	168, 476, 945, 1172
DpnII	GATC	4 cut(s)	166, 474, 943, 1170
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	227, 714
Eco81I	CCTNAGG	2 cut(s)	175, 1067
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	7 cut(s)	26, 400, 592, 679, 751, 1144, 1184
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	7 cut(s)	22, 396, 588, 675, 747, 1140, 1180
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	3 cut(s)	74, 909, 1157
FokI	GGATG	5 cut(s)	315, 342, 484, 551, 1109
Fsp4HI	GCNGC	3 cut(s)	74, 909, 1157
FspBI	CTAG	4 cut(s)	279, 420, 546, 1016
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	3 cut(s)	72, 656, 1014
GluI	GCNGC	3 cut(s)	74, 909, 1157
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	4 cut(s)	173, 499, 798, 951
HapII	CCGG	3 cut(s)	194, 300, 535
HhaI	GCGC	3 cut(s)	73, 657, 1015
Hin1II	CATG	7 cut(s)	26, 400, 592, 679, 751, 1144, 1184
Hin6I	GCGC	3 cut(s)	71, 655, 1013
HinP1I	GCGC	3 cut(s)	71, 655, 1013
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	5 cut(s)	44, 227, 488, 707, 725
HpaII	CCGG	3 cut(s)	194, 300, 535
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	987
Hpy188I	TCNGA	3 cut(s)	313, 601, 622
Hpy188III	TCNNGA	9 cut(s)	34, 194, 269, 388, 446, 458, 569, 827, 1181
Hpy8I	GTNNAC	1 cut(s)	987
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	2 cut(s)	838, 964
HpyCH4V	TGCA	9 cut(s)	155, 209, 353, 466, 592, 736, 744, 911, 1204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 296, 957, 1201
HpyF3I	CTNAG	7 cut(s)	42, 175, 447, 600, 968, 1067, 1167
Hsp92II	CATG	7 cut(s)	26, 400, 592, 679, 751, 1144, 1184
HspAI	GCGC	3 cut(s)	71, 655, 1013
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	166, 474, 943, 1170
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	5 cut(s)	36, 125, 271, 788, 1153
Lsp1109I	GCAGC	3 cut(s)	85, 895, 1168
LweI	GCATC	3 cut(s)	299, 631, 868
MaeI	CTAG	4 cut(s)	279, 420, 546, 1016
MalI	GATC	4 cut(s)	168, 476, 945, 1172
MboI	GATC	4 cut(s)	166, 474, 943, 1170
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	1170
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	5 cut(s)	197, 256, 507, 820, 897
MlyI	GAGTC	4 cut(s)	53, 221, 497, 716
MnlI	CCTC	6 cut(s)	184, 217, 445, 453, 997, 1062
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	4 cut(s)	407, 926, 1104, 1216
MslI	CAYNNNNRTG	2 cut(s)	66, 381
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	3 cut(s)	194, 300, 535
MspR9I	CCNGG	2 cut(s)	536, 992
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	992
MwoI	GCNNNNNNNGC	4 cut(s)	28, 296, 957, 1201
NciI	CCSGG	1 cut(s)	536
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	4 cut(s)	166, 474, 943, 1170
NlaIII	CATG	7 cut(s)	26, 400, 592, 679, 751, 1144, 1184
NlaIV	GGNNCC	2 cut(s)	920, 950
NsbI	TGCGCA	1 cut(s)	72
NspI	RCATGY	2 cut(s)	592, 1144
PagI	TCATGA	1 cut(s)	1180
PceI	AGGCCT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	1 cut(s)	725
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	3 cut(s)	75, 910, 1158
PleI	GAGTC	4 cut(s)	52, 221, 496, 715
PpsI	GAGTC	4 cut(s)	52, 221, 496, 715
Psp6I	CCWGG	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	990
PspN4I	GGNNCC	2 cut(s)	920, 950
PspPI	GGNCC	2 cut(s)	797, 949
PsuI	RGATCY	1 cut(s)	1170
RsaI	GTAC	3 cut(s)	234, 395, 809
RsaNI	GTAC	3 cut(s)	233, 394, 808
RseI	CAYNNNNRTG	2 cut(s)	66, 381
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	4 cut(s)	407, 926, 1104, 1216
SatI	GCNGC	3 cut(s)	74, 909, 1157
Sau3AI	GATC	4 cut(s)	166, 474, 943, 1170
Sau96I	GGNCC	2 cut(s)	797, 949
SchI	GAGTC	4 cut(s)	53, 221, 497, 716
ScrFI	CCNGG	2 cut(s)	536, 992
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	299, 631, 868
SmiMI	CAYNNNNRTG	2 cut(s)	66, 381
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	5 cut(s)	197, 256, 507, 820, 897
SseBI	AGGCCT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	1144
SspI	AATATT	1 cut(s)	1087
SspMI	CTAG	4 cut(s)	279, 420, 546, 1016
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	534, 990
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	838, 964
TaqI	TCGA	2 cut(s)	85, 570
TasI	AATT	5 cut(s)	197, 256, 507, 820, 897
TatI	WGTACW	3 cut(s)	232, 393, 807
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	4 cut(s)	407, 926, 1104, 1216
Tru9I	TTAA	4 cut(s)	407, 926, 1104, 1216
TscAI	CASTG	4 cut(s)	258, 268, 738, 967
TseI	GCWGC	3 cut(s)	73, 908, 1156
TspDTI	ATGAA	5 cut(s)	71, 191, 200, 413, 909
TspGWI	ACGGA	1 cut(s)	911
TspRI	CASTG	4 cut(s)	258, 268, 738, 967
Vha464I	CTTAAG	1 cut(s)	406
XapI	RAATTY	3 cut(s)	197, 820, 897
XceI	RCATGY	2 cut(s)	592, 1144
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	4 cut(s)	279, 420, 546, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.