Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016098.1

Orthogroup ID

OG0031195

Physical Location & Seq

Genomic Coordinates Forward (+)

461 .. 3965

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016098.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgggtttgttggaagtgaagcatggtttgctccagatagctgagtccttggactttctccataacaatgcgcatcttattcatcgagctatatcacccgagaatgtgtttattacatcaagtggagcttggaagcttggtggatttggttttgcaatctcaacagatcaggcctcaggcaatatgaatgttccggaatttcattatgcagagtatgatgttgaggactctgtacttccacttcagccatcactgaattacactgctcctgaacttgctaggagtaaagcatcttcagccggatgttcttctgatattttcagctttggatgtcttgcctaccacttgattgcacacaaacctttgtttgactgccacaataatgtcaagatgtacatgaataccttaagttatttatctagtgaagccttctcctctattcctcctgagttagttcctgacttgcaaaggatgatctctacaaatgagtctttcaggccatcagcaattgattttacaggttctccatttttccgggatgacactaggttgcgtgctcttcgttttctcgaccacatgctcgaaagggataacatgcagaaatctgagttcctaaaagcattgtctgatatgtggaaagattttgatgctcgtgtattgcgctataaggtactgcctcctctttgtgcagaactgaggaatttggtaatgcaaccgatgattctgcctatggttctcatgattgctgagtctcaggtactagttacttcacctttgcacatggaaatcaacagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0006810 GO:0006897 GO:0006898 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008333 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010604 GO:0010646 GO:0010648 GO:0016055 GO:0016192 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0030100 GO:0030111 GO:0030178 GO:0031323 GO:0031325 GO:0031623 GO:0032879 GO:0043112 GO:0043170 GO:0044237 GO:0044260 GO:0045807 GO:0046907 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060070 GO:0060255 GO:0060627 GO:0060828 GO:0065007 GO:0071704 GO:0090090 GO:0098657 GO:0198738 GO:1905114 GO:2000286 GO:2000369 GO:2000370

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Pkinase

Protein Analysis

265

Amino Acids

29.85

Weight (kDa)

5.53

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031195)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002219.1_g000012 Rmu_sc0016098.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	197, 700
AcuI	CTGAAG	2 cut(s)	227, 279
AfaI	GTAC	4 cut(s)	234, 395, 672, 759
AflII	CTTAAG	1 cut(s)	406
AhlI	ACTAGT	1 cut(s)	760
AluBI	AGCT	6 cut(s)	41, 89, 128, 136, 324, 795
AluI	AGCT	6 cut(s)	41, 89, 128, 136, 324, 795
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	756
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	171, 497
ApoI	RAATTY	2 cut(s)	197, 700
AspLEI	GCGC	2 cut(s)	73, 663
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	87, 762
AvaI	CYCGRG	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	175
BarI	GAAGNNNNNNTAC	4 cut(s)	225, 257, 277, 309
BauI	CACGAG	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	559
BccI	CCATC	2 cut(s)	256, 508
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	756
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	5 cut(s)	279, 420, 546, 761, 796
BfrI	CTTAAG	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	3 cut(s)	82, 299, 637
BpmI	CTGGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bse21I	CCTNAGG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	4 cut(s)	308, 335, 477, 544
BseMII	CTCAG	7 cut(s)	33, 189, 438, 597, 686, 738, 767
BseRI	GAGGAG	2 cut(s)	424, 669
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	173, 499
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	194, 300, 535
BsmAI	GTCTC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	173, 499
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	166, 474
BspANI	GGCC	2 cut(s)	173, 499
BspCNI	CTCAG	7 cut(s)	34, 188, 439, 598, 687, 739, 766
BspEI	TCCGGA	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	738
BspQI	GCTCTTC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	166, 474
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	564
BstAFI	CTTAAG	1 cut(s)	406
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	7 cut(s)	42, 175, 447, 606, 695, 747, 753
BstF5I	GGATG	4 cut(s)	308, 335, 477, 544
BstHHI	GCGC	2 cut(s)	73, 663
BstKTI	GATC	2 cut(s)	169, 477
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	2 cut(s)	166, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 296
BstNSI	RCATGY	2 cut(s)	580, 598
BstSCI	CCNGG	1 cut(s)	534
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	173, 499
BtsCI	GGATG	4 cut(s)	308, 335, 477, 544
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	251, 261
Cac8I	GCNNGC	1 cut(s)	555
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	73, 663
Csp6I	GTAC	4 cut(s)	233, 394, 671, 758
CviAII	CATG	6 cut(s)	23, 397, 577, 595, 739, 781
CviQI	GTAC	4 cut(s)	233, 394, 671, 758
DdeI	CTNAG	7 cut(s)	42, 175, 447, 606, 695, 747, 753
DpnI	GATC	2 cut(s)	168, 476
DpnII	GATC	2 cut(s)	166, 474
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	227, 279
Eco81I	CCTNAGG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	6 cut(s)	26, 400, 580, 598, 742, 784
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	6 cut(s)	22, 396, 576, 594, 738, 780
FokI	GGATG	4 cut(s)	315, 342, 484, 551
FspAI	RTGCGCAY	1 cut(s)	72
FspBI	CTAG	5 cut(s)	279, 420, 546, 761, 796
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	72, 662
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	173, 499
HapII	CCGG	3 cut(s)	194, 300, 535
HhaI	GCGC	2 cut(s)	73, 663
Hin1II	CATG	6 cut(s)	26, 400, 580, 598, 742, 784
Hin6I	GCGC	2 cut(s)	71, 661
HinP1I	GCGC	2 cut(s)	71, 661
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	5 cut(s)	44, 227, 488, 721, 749
HpaII	CCGG	3 cut(s)	194, 300, 535
HphI	GGTGA	2 cut(s)	87, 762
Hpy188I	TCNGA	3 cut(s)	313, 607, 628
Hpy188III	TCNNGA	8 cut(s)	34, 194, 269, 388, 446, 458, 569, 739
HpyAV	CCTTC	1 cut(s)	439
HpyCH4V	TGCA	8 cut(s)	155, 209, 353, 466, 598, 689, 712, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 296
HpyF3I	CTNAG	7 cut(s)	42, 175, 447, 606, 695, 747, 753
Hsp92II	CATG	6 cut(s)	26, 400, 580, 598, 742, 784
HspAI	GCGC	2 cut(s)	71, 661
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	166, 474
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	3 cut(s)	36, 125, 271
LweI	GCATC	3 cut(s)	82, 299, 637
MaeI	CTAG	5 cut(s)	279, 420, 546, 761, 796
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	2 cut(s)	168, 476
MboI	GATC	2 cut(s)	166, 474
MboII	GAAGA	3 cut(s)	285, 300, 551
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	4 cut(s)	197, 256, 507, 700
MlyI	GAGTC	4 cut(s)	53, 221, 497, 758
MnlI	CCTC	7 cut(s)	184, 217, 445, 453, 687, 690, 690
MroI	TCCGGA	1 cut(s)	193
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	2 cut(s)	66, 381
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	3 cut(s)	194, 300, 535
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	28, 296
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	2 cut(s)	166, 474
NlaIII	CATG	6 cut(s)	26, 400, 580, 598, 742, 784
NsbI	TGCGCA	1 cut(s)	72
NspI	RCATGY	2 cut(s)	580, 598
PagI	TCATGA	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	721
PfoI	TCCNGGA	1 cut(s)	534
PleI	GAGTC	4 cut(s)	52, 221, 496, 757
PpsI	GAGTC	4 cut(s)	52, 221, 496, 757
RsaI	GTAC	4 cut(s)	234, 395, 672, 759
RsaNI	GTAC	4 cut(s)	233, 394, 671, 758
RseI	CAYNNNNRTG	2 cut(s)	66, 381
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	407
Sau3AI	GATC	2 cut(s)	166, 474
SchI	GAGTC	4 cut(s)	53, 221, 497, 758
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	82, 299, 637
SmiMI	CAYNNNNRTG	2 cut(s)	66, 381
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	4 cut(s)	197, 256, 507, 700
SseBI	AGGCCT	1 cut(s)	173
SspMI	CTAG	5 cut(s)	279, 420, 546, 761, 796
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	48
TaqI	TCGA	3 cut(s)	85, 570, 582
TasI	AATT	4 cut(s)	197, 256, 507, 700
TatI	WGTACW	2 cut(s)	232, 393
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	258, 268
TspDTI	ATGAA	4 cut(s)	71, 191, 200, 413
TspRI	CASTG	2 cut(s)	258, 268
Vha464I	CTTAAG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	197, 700
XceI	RCATGY	2 cut(s)	580, 598
XspI	CTAG	5 cut(s)	279, 420, 546, 761, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.