Rmu_sc0002311.1_g000025

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002311.1
OG0025532
Physical Location & Seq
Reverse (-)
147195 .. 147521
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atggaaaatttaaggtcaagattcgagtcagaaaattatacctttgatgtatacgtgacgaaggacgagcgagttaaggttatggatttcaacccttggggtgcatttacactgcctctgatgtttacatgggagaaactggaacagagtgataatgaacaaggggatggtgtggacttcagaattgtggagagccagtgtggtgttaggccaggtttgaagacagcagtgccctacgattatgtggacactagctctgggtgtggctgggaccagtttttcaggaacgcggatgaagagttactgcggcaaagtaggtctgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

4.45

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 2 - 85 1.3e-21 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025532)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002311.1_g000025
rosa_roxburghii Rroxscaffold_1G00061080
rosa_samantha Rh5AG343400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 290, 307
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 91, 220
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 271
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 213
BfaI CTAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse1I ACTGG 3 cut(s) 144, 196, 274
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 172, 298
BseNI ACTGG 3 cut(s) 144, 196, 274
BseSI GKGCMC 1 cut(s) 234
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 211
BslFI GGGAC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 234
BspACI CCGC 2 cut(s) 290, 307
BspANI GGCC 1 cut(s) 211
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 272
BsrI ACTGG 3 cut(s) 144, 196, 274
BssECI CCNNGG 1 cut(s) 95
BssNAI GTATAC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 95
Bst1107I GTATAC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 55
BstF5I GGATG 2 cut(s) 172, 298
BstFNI CGCG 1 cut(s) 290
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 227
BstZ17I GTATAC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 172, 298
BtsI GCAGTG 2 cut(s) 110, 234
BtsIMutI CAGTG 3 cut(s) 110, 203, 234
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 1 cut(s) 129
CviJI RGCY 4 cut(s) 195, 211, 255, 267
CviKI_1 RGCY 4 cut(s) 195, 211, 255, 267
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 1 cut(s) 132
FaiI YATR 5 cut(s) 39, 52, 83, 130, 243
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 128
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 2 cut(s) 179, 305
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 252
GluI GCNGC 1 cut(s) 308
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 211
Hin1II CATG 1 cut(s) 132
HinfI GANTC 2 cut(s) 21, 26
Hpy166II GTNNAC 4 cut(s) 52, 126, 175, 247
Hpy188I TCNGA 3 cut(s) 31, 120, 182
Hpy188III TCNNGA 2 cut(s) 18, 283
Hpy8I GTNNAC 4 cut(s) 52, 126, 175, 247
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 132
LpnPI CCDG 8 cut(s) 125, 198, 209, 225, 243, 253, 268, 287
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 55, 300
MboII GAAGA 2 cut(s) 232, 308
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 7, 34, 183
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 1 cut(s) 126
MseI TTAA 3 cut(s) 11, 75, 325
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 290
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 11, 75, 325
SatI GCNGC 1 cut(s) 308
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 234
SetI ASST 7 cut(s) 17, 44, 57, 81, 217, 257, 320
SinI GGWCC 1 cut(s) 271
Sse9I AATT 3 cut(s) 7, 34, 183
SsiI CCGC 2 cut(s) 290, 307
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 95
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 7, 34, 183
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 3 cut(s) 11, 75, 325
Tru9I TTAA 3 cut(s) 11, 75, 325
TscAI CASTG 3 cut(s) 117, 203, 234
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 171, 309
TspRI CASTG 3 cut(s) 117, 203, 234
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.