Rroxscaffold_1G00061080

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0025532
Physical Location & Seq
Forward (+)
83274469 .. 83274807
339 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00061080.1

Sequence Viewer

Length: 339 bp
ATGGAAAATTTAAGGTCAAGATTTGAGTCAGAAAATTACACCTTTGATGTGTATGTGACGAAGGAAGAGCGAGTTAAGGTTATGGATTTCAACCCTTGGGGAGCATTTACACTGCCTCTGATGTTTACATGGGAGGAACTGGAACAGAATGATAATGAACAAGGAGATGGTGTGGACTTCAGAATTGTGGAGAGCCAGTGTGGTGTTAGGCCAGGTTTGAAGACTGCAGTGCCCTACGATTATGTGGATACTAGCTCCGGGAGTGGCTGGGACCAGTTTTTCAGGAACGCCAATGAAGAGTTGCAGCGTCAAATTAGGTCTCCTGAAGCAGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

112

Amino Acids

13.02

Weight (kDa)

4.35

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 2 - 85 2.9e-22 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025532)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002311.1_g000025
rosa_roxburghii Rroxscaffold_1G00061080
rosa_samantha Rh5AG343400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 2 cut(s) 91, 220
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 324
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 259
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 320
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 2 cut(s) 213, 259
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 2 cut(s) 213, 259
BpiI GAAGAC 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 4 cut(s) 156, 182, 186, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 3 cut(s) 144, 196, 274
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 3 cut(s) 144, 196, 274
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 234
BspANI GGCC 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 324
BsrI ACTGG 3 cut(s) 144, 196, 274
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 60, 291
BstENI CCTNNNNNAGG 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 211, 257
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 227
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 211
BtsI GCAGTG 2 cut(s) 110, 234
BtsIMutI CAGTG 3 cut(s) 110, 203, 234
BveI ACCTGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 296
CviAII CATG 1 cut(s) 129
CviJI RGCY 4 cut(s) 195, 211, 255, 267
CviKI_1 RGCY 4 cut(s) 195, 211, 255, 267
Eam1104I CTCTTC 2 cut(s) 60, 291
EarI CTCTTC 2 cut(s) 60, 291
Eco130I CCWWGG 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 1 cut(s) 132
FaiI YATR 4 cut(s) 54, 83, 130, 243
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 252
GluI GCNGC 1 cut(s) 305
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 132
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 126, 175
Hpy188I TCNGA 3 cut(s) 31, 120, 182
Hpy188III TCNNGA 3 cut(s) 18, 283, 323
Hpy8I GTNNAC 2 cut(s) 126, 175
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 227, 304
Hsp92II CATG 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 101, 260
LpnPI CCDG 9 cut(s) 125, 198, 209, 225, 253, 268, 271, 287, 315
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 3 cut(s) 77, 232, 308
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 7, 34, 183, 312
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 126, 127
MseI TTAA 3 cut(s) 11, 75, 337
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 213, 259
MvaI CCWGG 1 cut(s) 213
NciI CCSGG 1 cut(s) 259
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 257
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 11, 75, 337
SatI GCNGC 1 cut(s) 305
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 213, 259
SduI GDGCHC 1 cut(s) 234
SetI ASST 7 cut(s) 17, 44, 81, 217, 257, 320, 334
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 271
Sse9I AATT 4 cut(s) 7, 34, 183, 312
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 211, 257
StyI CCWWGG 1 cut(s) 95
TasI AATT 4 cut(s) 7, 34, 183, 312
Tru1I TTAA 3 cut(s) 11, 75, 337
Tru9I TTAA 3 cut(s) 11, 75, 337
TscAI CASTG 3 cut(s) 117, 203, 234
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 171, 309
TspRI CASTG 3 cut(s) 117, 203, 234
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 1 cut(s) 7
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.