Rmu_sc0002316.1_g000097

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
OG0031203
Physical Location & Seq
Reverse (-)
425938 .. 430676
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000097.1.cds

Sequence Viewer

Length: 738 bp
atggaacttgatctctcgaaccagtgtacagagaaacttaaaatggaactcgtcgagggcctaggcttgaccgacattgctctaacgttggtccattggaaatctccaaaaagtggaattacactagtggatggttcacttaagaactggttggatatactcatgacaatgattaaaatgatgctgggcctgctggccatgtttattgttgctccgggggttcaaacaactatcattgttataataagaggaagcctaacccgttgcaaatgcccccacggtcgttatgacgatgatgatgttttaaagcctagtcacgaggagtgtatttgtgacacggttcctcgtagggttggacacatggcagacccacatatcttccttgttccactgattcaacgttttctggacatattgattcagattttcatcttgtaccatcatcacaaacaaatggtattagtcggggggagaagctttaggagcatcgtttctggttggtgtgcaatacctgaacctccaccgcttgttgttggattggatgggccttggatggaattgaagttgaagcttttcaaagatgatatatcaatgcttgtactaactgcgcctggaggaagtgggaaaactacactggcaataaagttttttcaaggtggagaagtcagaggacgcattgattcagatttttgtcttgtaccatcatcacaaacaaatttgttgaatctcagtagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

245

Amino Acids

27.22

Weight (kDa)

6.7

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031203)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002316.1_g000097
rosa_samantha Rh2DG176100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 113
AciI CCGC 1 cut(s) 524
AclI AACGTT 2 cut(s) 86, 400
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 715
AfaI GTAC 4 cut(s) 28, 437, 600, 699
AfiI CCNNNNNNNGG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 7 cut(s) 224, 398, 562, 568, 577, 653, 724
AhlI ACTAGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 3 cut(s) 477, 571, 735
AluI AGCT 3 cut(s) 477, 571, 735
AlwNI CAGNNNCTG 1 cut(s) 735
AoxI GGCC 4 cut(s) 58, 187, 195, 545
ApoI RAATTY 1 cut(s) 715
Asp700I GAANNNNTTC 1 cut(s) 572
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 4 cut(s) 58, 91, 187, 545
AsuC2I CCSGG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 61
BalI TGGCCA 1 cut(s) 197
BauI CACGAG 1 cut(s) 317
BccI CCATC 5 cut(s) 125, 447, 536, 547, 709
BciT130I CCWGG 1 cut(s) 612
BcnI CCSGG 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 3 cut(s) 62, 125, 312
BfrI CTTAAG 1 cut(s) 140
BlnI CCTAGG 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 216, 612
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 4 cut(s) 58, 91, 187, 545
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 216, 612
BmsI GCATC 2 cut(s) 171, 495
BpmI CTGGAG 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 61, 215, 277, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 22, 152, 639
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 428
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 4 cut(s) 61, 215, 277, 548
BseGI GGATG 3 cut(s) 136, 547, 558
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 3 cut(s) 22, 152, 639
BseRI GAGGAG 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 4 cut(s) 60, 189, 197, 547
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 4 cut(s) 60, 189, 197, 547
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 524
BspANI GGCC 4 cut(s) 60, 189, 197, 547
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 3 cut(s) 22, 152, 639
BssECI CCNNGG 4 cut(s) 61, 215, 277, 548
BssMI GATC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 2 cut(s) 61, 548
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 281, 340
BstAFI CTTAAG 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 191, 195
BstDEI CTNAG 1 cut(s) 728
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 3 cut(s) 136, 547, 558
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 190, 483
BstNI CCWGG 1 cut(s) 612
BstSCI CCNGG 2 cut(s) 214, 610
BsuRI GGCC 4 cut(s) 60, 189, 197, 547
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 3 cut(s) 136, 547, 558
BtsIMutI CAGTG 3 cut(s) 29, 389, 632
Cac8I GCNNGC 2 cut(s) 191, 195
CaiI CAGNNNCTG 1 cut(s) 735
CciI TCATGA 1 cut(s) 162
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 4 cut(s) 58, 91, 187, 545
CseI GACGC 1 cut(s) 681
Csp6I GTAC 4 cut(s) 27, 436, 599, 698
CviAII CATG 3 cut(s) 163, 199, 361
CviQI GTAC 4 cut(s) 27, 436, 599, 698
DdeI CTNAG 1 cut(s) 728
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraI TTTAAA 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 61, 548
Eco47I GGWCC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 61, 548
ErhI CCWWGG 2 cut(s) 61, 548
FaeI CATG 3 cut(s) 166, 202, 364
FaiI YATR 9 cut(s) 158, 164, 200, 242, 288, 362, 375, 413, 587
FatI CATG 3 cut(s) 162, 198, 360
FokI GGATG 3 cut(s) 143, 554, 565
FspBI CTAG 3 cut(s) 62, 125, 312
GlaI GCGC 1 cut(s) 609
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 4 cut(s) 60, 189, 197, 547
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 681
HhaI GCGC 1 cut(s) 610
Hin1II CATG 3 cut(s) 166, 202, 364
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HindIII AAGCTT 2 cut(s) 475, 569
HinfI GANTC 4 cut(s) 394, 418, 680, 724
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 27, 137
Hpy188I TCNGA 3 cut(s) 423, 668, 685
Hpy188III TCNNGA 4 cut(s) 16, 163, 317, 407
Hpy8I GTNNAC 2 cut(s) 27, 137
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 281, 340
HpyCH4IV ACGT 2 cut(s) 86, 400
HpyCH4V TGCA 2 cut(s) 267, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 483
HpyF3I CTNAG 1 cut(s) 728
HpySE526I ACGT 2 cut(s) 86, 400
Hsp92II CATG 3 cut(s) 166, 202, 364
HspAI GCGC 1 cut(s) 608
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 217, 483
LweI GCATC 2 cut(s) 171, 495
MaeI CTAG 3 cut(s) 62, 125, 312
MaeII ACGT 2 cut(s) 86, 400
MaeIII GTNAC 2 cut(s) 314, 332
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 3 cut(s) 117, 557, 715
MluNI TGGCCA 1 cut(s) 197
MmeI TCCRAC 3 cut(s) 132, 334, 514
MnlI CCTC 7 cut(s) 49, 242, 313, 354, 528, 608, 662
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 197
MseI TTAA 4 cut(s) 39, 141, 174, 305
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 216, 612
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 190, 483
NciI CCSGG 1 cut(s) 216
NdeII GATC 1 cut(s) 10
NlaIII CATG 3 cut(s) 166, 202, 364
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 2 cut(s) 314, 332
PagI TCATGA 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 4 cut(s) 394, 418, 680, 724
PflMI CCANNNNNTGG 1 cut(s) 113
PsiI TTATAA 1 cut(s) 242
Psp1406I AACGTT 2 cut(s) 86, 400
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 4 cut(s) 58, 91, 187, 545
PstNI CAGNNNCTG 1 cut(s) 735
RsaI GTAC 4 cut(s) 28, 437, 600, 699
RsaNI GTAC 4 cut(s) 27, 436, 599, 698
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 4 cut(s) 39, 141, 174, 305
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 4 cut(s) 58, 91, 187, 545
ScrFI CCNGG 2 cut(s) 216, 612
SetI ASST 8 cut(s) 89, 403, 479, 514, 520, 573, 658, 737
SfaNI GCATC 2 cut(s) 171, 495
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 3 cut(s) 117, 557, 715
SsiI CCGC 1 cut(s) 524
SspMI CTAG 3 cut(s) 62, 125, 312
StyD4I CCNGG 2 cut(s) 214, 610
StyI CCWWGG 2 cut(s) 61, 548
TaaI ACNGT 2 cut(s) 281, 340
TaiI ACGT 2 cut(s) 89, 403
TaqI TCGA 2 cut(s) 17, 54
TaqII GACCGA 1 cut(s) 86
TasI AATT 3 cut(s) 117, 557, 715
TatI WGTACW 2 cut(s) 26, 598
TfiI GAWTC 4 cut(s) 394, 418, 680, 724
Tru1I TTAA 4 cut(s) 39, 141, 174, 305
Tru9I TTAA 4 cut(s) 39, 141, 174, 305
TscAI CASTG 3 cut(s) 29, 396, 639
TseFI GTSAC 2 cut(s) 314, 332
Tsp45I GTSAC 2 cut(s) 314, 332
TspDTI ATGAA 1 cut(s) 418
TspRI CASTG 3 cut(s) 29, 396, 639
Van91I CCANNNNNTGG 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 715
XmaJI CCTAGG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 3 cut(s) 62, 125, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.