Rh2DG176100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0031203
Physical Location & Seq
Forward (+)
15467762 .. 15471953
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG176100.1

Sequence Viewer

Length: 618 bp
ATGGCTGCTGCGCTTGCTAGCGGCGCAGTGTTAGGTACAGTATTTTCAGAGTCCTATCCAGAAGTCACGAATTTGTCCGGTCGAATTGGAAGACAGGCCAAATCAAGGCACGGTCAAACCGGAAGACTTTGGCAGCTCCCAAGTTTGTTGAACTACACCGGCCTTCAGATCTTTCTTGTTCCACTGATTCAACGTTTTCTGGACATATTGATTCAGATTTTCATCTTGTACCATCATCACAAACAAATGGTATTAGTCGGGGGAGAAGCTTTAGGAGCATCGTTTCTGGTGCTGTATGAGGCCATTAAGGAACTGAATGACCATCCTTTGATGTTAAAATCCCTCCTAGGAGATATCAAATCCACACTGCTCCAAGGTTGGTGTGCAATACCTGAACCTCCACCGCTAGTTGTTGGATTGGATGGGCCTTTGATGGAATTGAAGATGAAGCTTTTCAAAGATGATATATCAATGCTTGTACTAACTGCGCCTGGAGGAAGTGGGAAAACTACACTGGCAATGAAGTTTTTTCAAGGTGGAGAAGTCAGAGGACGCCTTGATTCAGATTTTTGTCGTGTACCATCACCACAAACAAATTTGTTGAATCTCAGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

205

Amino Acids

22.4

Weight (kDa)

8.57

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031203)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002316.1_g000097
rosa_samantha Rh2DG176100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 404
AclI AACGTT 1 cut(s) 193
AcsI RAATTY 2 cut(s) 70, 595
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 4 cut(s) 37, 230, 480, 579
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 6 cut(s) 151, 191, 442, 457, 533, 604
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 136, 269, 451, 615
AluI AGCT 4 cut(s) 136, 269, 451, 615
AlwNI CAGNNNCTG 1 cut(s) 615
AoxI GGCC 4 cut(s) 96, 160, 300, 425
ApeKI GCWGC 3 cut(s) 5, 8, 133
ApoI RAATTY 2 cut(s) 70, 595
Asp700I GAANNNNTTC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 346
AspLEI GCGC 3 cut(s) 13, 26, 490
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 576
AsuNHI GCTAGC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 97, 130
BbvI GCAGC 1 cut(s) 145
BccI CCATC 5 cut(s) 240, 330, 416, 427, 589
BciT130I CCWGG 1 cut(s) 492
BfaI CTAG 3 cut(s) 18, 347, 407
BglII AGATCT 1 cut(s) 168
BisI GCNGC 4 cut(s) 6, 9, 22, 134
BlnI CCTAGG 1 cut(s) 346
BlsI GCNGC 4 cut(s) 7, 10, 23, 135
Bme1390I CCNGG 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 287
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 2 cut(s) 97, 130
BpmI CTGGAG 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 346, 373
BsaWI WCCGGW 2 cut(s) 77, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 346, 373
BseGI GGATG 2 cut(s) 322, 427
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 519
BseXI GCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 98, 162, 302, 427
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 3 cut(s) 78, 120, 159
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 4 cut(s) 98, 162, 302, 427
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 2 cut(s) 21, 404
BspANI GGCC 4 cut(s) 98, 162, 302, 427
BspOI GCTAGC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 519
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 346, 373
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 553
BssT1I CCWWGG 2 cut(s) 346, 373
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 40, 113
BstACI GRCGYC 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 15, 19
BstDEI CTNAG 1 cut(s) 608
BstF5I GGATG 2 cut(s) 322, 427
BstHHI GCGC 3 cut(s) 13, 26, 490
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 275
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 2 cut(s) 97, 130
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 4 cut(s) 98, 162, 302, 427
BtsCI GGATG 2 cut(s) 322, 427
BtsI GCAGTG 2 cut(s) 33, 365
BtsIMutI CAGTG 4 cut(s) 33, 182, 365, 512
Cac8I GCNNGC 2 cut(s) 15, 19
CaiI CAGNNNCTG 1 cut(s) 615
CfoI GCGC 3 cut(s) 13, 26, 490
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 561
Csp6I GTAC 4 cut(s) 36, 229, 479, 578
CviJI RGCY 9 cut(s) 5, 98, 136, 162, 269, 302, 427, 451, 615
CviKI_1 RGCY 9 cut(s) 5, 98, 136, 162, 269, 302, 427, 451, 615
CviQI GTAC 4 cut(s) 36, 229, 479, 578
DdeI CTNAG 1 cut(s) 608
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 346, 373
Eco32I GATATC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 490
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 346, 373
ErhI CCWWGG 2 cut(s) 346, 373
FaiI YATR 3 cut(s) 206, 297, 467
Fnu4HI GCNGC 4 cut(s) 6, 9, 22, 134
FokI GGATG 2 cut(s) 309, 434
Fsp4HI GCNGC 4 cut(s) 6, 9, 22, 134
FspBI CTAG 3 cut(s) 18, 347, 407
GlaI GCGC 3 cut(s) 12, 25, 489
GluI GCNGC 4 cut(s) 6, 9, 22, 134
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 4 cut(s) 98, 162, 302, 427
HapII CCGG 3 cut(s) 78, 120, 159
HgaI GACGC 1 cut(s) 561
HhaI GCGC 3 cut(s) 13, 26, 490
Hin1I GRCGYC 1 cut(s) 553
Hin6I GCGC 3 cut(s) 11, 24, 488
HinP1I GCGC 3 cut(s) 11, 24, 488
HindIII AAGCTT 2 cut(s) 267, 449
HinfI GANTC 5 cut(s) 50, 187, 211, 560, 604
HpaII CCGG 3 cut(s) 78, 120, 159
HphI GGTGA 1 cut(s) 576
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 5 cut(s) 49, 168, 216, 548, 565
Hpy188III TCNNGA 3 cut(s) 59, 67, 200
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 40, 113
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 275
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 553
HspAI GCGC 3 cut(s) 11, 24, 488
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 3 cut(s) 141, 275, 375
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 287
MaeI CTAG 3 cut(s) 18, 347, 407
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 3 cut(s) 102, 135, 454
MflI RGATCY 1 cut(s) 168
MluCI AATT 4 cut(s) 70, 84, 437, 595
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 5 cut(s) 292, 353, 408, 488, 542
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 2 cut(s) 306, 335
MspI CCGG 3 cut(s) 78, 120, 159
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 275
NdeII GATC 1 cut(s) 168
NheI GCTAGC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 4 cut(s) 187, 211, 560, 604
PkrI GCNGC 4 cut(s) 7, 10, 23, 135
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspPI GGNCC 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 615
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 4 cut(s) 37, 230, 480, 579
RsaNI GTAC 4 cut(s) 36, 229, 479, 578
SaqAI TTAA 2 cut(s) 306, 335
SatI GCNGC 4 cut(s) 6, 9, 22, 134
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 492
SfaNI GCATC 1 cut(s) 287
Sse9I AATT 4 cut(s) 70, 84, 437, 595
SsiI CCGC 2 cut(s) 21, 404
SspMI CTAG 3 cut(s) 18, 347, 407
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 2 cut(s) 346, 373
TaaI ACNGT 2 cut(s) 40, 113
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 82
TasI AATT 4 cut(s) 70, 84, 437, 595
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 4 cut(s) 187, 211, 560, 604
Tru1I TTAA 2 cut(s) 306, 335
Tru9I TTAA 2 cut(s) 306, 335
TscAI CASTG 4 cut(s) 33, 189, 372, 519
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 5, 8, 133
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 211, 461, 536
TspRI CASTG 4 cut(s) 33, 189, 372, 519
XapI RAATTY 2 cut(s) 70, 595
XmaJI CCTAGG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 3 cut(s) 18, 347, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.