Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002337.1

Orthogroup ID

OG0025533

Physical Location & Seq

Genomic Coordinates Forward (+)

7950 .. 8414

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002337.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgacattcccatttctcactaaaatcctctacgctcaaatctctctctctctctctctggatggaatcttgggcctgctggaccggctcctcttcctcagccgcggccaaaccattttcaacggctccccagctcagcttccctcgtacttcgctgacttcggctggcccatacccgactccgaaaacaaaaccgagttcgctctggacctgatcagagaactggaaggctcccctggtgggacccaatccctcgtcgagttcaacacatcctggcacagcgctcattaccgctccgccaccgacatacgacacgtggttcctttccaagaagccatctccgcaggcatttctcgaggcaagctcgtctccggctccaccaacaactacgccagccccaactccatggtccccaccttcgccaaccccatctggatcgaaatcgccgtcctcgtgaggttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

154

Amino Acids

16.95

Weight (kDa)

5.5

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025533)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002337.1_g000004 Rmu_sc0002337.1_g000006
rosa_samantha	Rh6DG398700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	1 cut(s)	105
AciI	CCGC	5 cut(s)	103, 105, 292, 297, 342
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	106
AcvI	CACGTG	1 cut(s)	316
AfaI	GTAC	1 cut(s)	149
AfeI	AGCGCT	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	121, 265
AjnI	CCWGG	2 cut(s)	235, 272
AluBI	AGCT	3 cut(s)	134, 139, 364
AluI	AGCT	3 cut(s)	134, 139, 364
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	354
Aor51HI	AGCGCT	1 cut(s)	283
AoxI	GGCC	3 cut(s)	73, 106, 167
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	6 cut(s)	73, 82, 168, 208, 243, 409
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	4 cut(s)	82, 208, 243, 409
BauI	CACGAG	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	98
BccI	CCATC	3 cut(s)	56, 344, 437
BceAI	ACGGC	2 cut(s)	139, 431
BciT130I	CCWGG	2 cut(s)	237, 274
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	2 cut(s)	103, 106
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	2 cut(s)	104, 107
Bme1390I	CCNGG	2 cut(s)	237, 274
Bme18I	GGWCC	4 cut(s)	82, 208, 243, 409
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	6 cut(s)	73, 82, 168, 208, 243, 409
BmiI	GGNNCC	8 cut(s)	89, 127, 232, 244, 245, 321, 376, 411
BmrFI	CCNGG	2 cut(s)	237, 274
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	103, 235, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	237, 274
BseDI	CCNNGG	3 cut(s)	103, 235, 405
BseGI	GGATG	2 cut(s)	67, 269
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	112, 149
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	75, 108, 169
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	85, 372
BslFI	GGGAC	2 cut(s)	256, 395
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	2 cut(s)	256, 395
BsnI	GGCC	3 cut(s)	75, 108, 169
BsoBI	CYCGRG	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	213, 435
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	5 cut(s)	103, 105, 292, 297, 342
BspANI	GGCC	3 cut(s)	75, 108, 169
BspCNI	CTCAG	2 cut(s)	111, 148
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	8 cut(s)	89, 127, 232, 244, 245, 321, 376, 411
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	103, 235, 405
BssMI	GATC	2 cut(s)	213, 435
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	237, 274
Bst6I	CTCTTC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	5 cut(s)	77, 167, 346, 362, 394
BstDEI	CTNAG	2 cut(s)	98, 135
BstDSI	CCRYGG	2 cut(s)	103, 405
BstF5I	GGATG	2 cut(s)	67, 269
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	216, 438
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	213, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 341
BstNI	CCWGG	2 cut(s)	237, 274
BstSCI	CCNGG	2 cut(s)	235, 272
BstUI	CGCG	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	75, 108, 169
BtgI	CCRYGG	2 cut(s)	103, 405
BtsCI	GGATG	2 cut(s)	67, 269
Cac8I	GCNNGC	5 cut(s)	77, 167, 346, 362, 394
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	6 cut(s)	73, 82, 168, 208, 243, 409
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	406
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	98, 135
DpnI	GATC	2 cut(s)	215, 437
DpnII	GATC	2 cut(s)	213, 435
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	405
Eco47I	GGWCC	4 cut(s)	82, 208, 243, 409
Eco47III	AGCGCT	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	235, 272
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	409
FaiI	YATR	4 cut(s)	173, 308, 407, 463
FaqI	GGGAC	2 cut(s)	256, 395
FatI	CATG	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	103, 106
FokI	GGATG	2 cut(s)	74, 256
Fsp4HI	GCNGC	2 cut(s)	103, 106
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	2 cut(s)	103, 106
GsaI	CCCAGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	75, 108, 169
HapII	CCGG	2 cut(s)	85, 372
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	66, 179
HpaII	CCGG	2 cut(s)	85, 372
Hpy188I	TCNGA	2 cut(s)	184, 218
Hpy188III	TCNNGA	5 cut(s)	59, 206, 354, 433, 454
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	221, 427
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 341
HpyF3I	CTNAG	2 cut(s)	98, 135
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	1 cut(s)	282
KflI	GGGWCCC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	213
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	213, 435
LmnI	GCTCC	5 cut(s)	93, 131, 236, 299, 380
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	215, 437
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	2 cut(s)	213, 435
MboII	GAAGA	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	8 cut(s)	38, 101, 107, 154, 263, 350, 450, 461
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	2 cut(s)	85, 372
MspR9I	CCNGG	2 cut(s)	237, 274
MvaI	CCWGG	2 cut(s)	237, 274
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	85, 341
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	213, 435
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	8 cut(s)	89, 127, 232, 244, 245, 321, 376, 411
PaeR7I	CTCGAG	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 450
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	104, 107
PleI	GAGTC	1 cut(s)	173
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	235, 272
PspCI	CACGTG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	235, 272
PspN4I	GGNNCC	8 cut(s)	89, 127, 232, 244, 245, 321, 376, 411
PspPI	GGNCC	6 cut(s)	73, 82, 168, 208, 243, 409
PspPPI	RGGWCCY	1 cut(s)	243
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	106
SatI	GCNGC	2 cut(s)	103, 106
Sau3AI	GATC	2 cut(s)	213, 435
Sau96I	GGNCC	6 cut(s)	73, 82, 168, 208, 243, 409
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	237, 274
SetI	ASST	7 cut(s)	136, 141, 213, 318, 366, 419, 461
Sfr274I	CTCGAG	1 cut(s)	354
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SinI	GGWCC	4 cut(s)	82, 208, 243, 409
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SsiI	CCGC	5 cut(s)	103, 105, 292, 297, 342
StyD4I	CCNGG	2 cut(s)	235, 272
StyI	CCWWGG	1 cut(s)	405
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	258, 355, 438
TauI	GCSGC	2 cut(s)	105, 108
TfiI	GAWTC	1 cut(s)	66
VpaK11BI	GGWCC	4 cut(s)	82, 208, 243, 409
XhoI	CTCGAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.