Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0025533

Physical Location & Seq

Genomic Coordinates Reverse (-)

58878367 .. 58878873

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG398700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACATTCCCATTTCTCACTAAAATCCTCTGCGCTCAAATATCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGGATGGAATCTTGGGCCTGCTGGACCGGCTCCTCTTCCTCAGCAGTGGCCAAACCATTTTCAGCGGCTCGCCAGTTCAGCTTCCCTCGTACTTCACCGACTTCGGCTGGCCCATACCCGACTCCGAAAACAAAACCGAGTTCGCTCTGGACCTGATCCGAGAACTGGAAGGCTCCCCCGGCGGGACCCAATCCCTCGTCGAGTTCAACACGTCTTGGCACAGCACTTACTACCGCTCCGCCACCGACATACGACACATGGTTCCTCTCCAAGAAGCCATCTCCGCCGGCATTTCTCGAGGCAAGCTCGTCTCCGGCGCCACCAACAACGACGCTAGCCCCAACTCCATGGTCCCCACCTTCGCCAACCCCATCTGGATCGAAATCGCCGTCCTCGCGAAACGCTCCATGAAAAACTCGAGACGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

168

Amino Acids

18.42

Weight (kDa)

6.08

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025533)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002337.1_g000004 Rmu_sc0002337.1_g000006
rosa_samantha	Rh6DG398700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	312
AccII	CGCG	1 cut(s)	473
AciI	CCGC	5 cut(s)	141, 258, 310, 315, 360
AclWI	GGATC	2 cut(s)	226, 461
AcoI	YGGCCR	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	241, 258
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	288
AluBI	AGCT	2 cut(s)	157, 382
AluI	AGCT	2 cut(s)	157, 382
Alw26I	GTCTC	2 cut(s)	391, 490
AlwI	GGATC	2 cut(s)	226, 461
Ama87I	CYCGRG	2 cut(s)	372, 493
AoxI	GGCC	3 cut(s)	91, 124, 185
ArsI	GACNNNNNNTTYG	2 cut(s)	450, 482
AspLEI	GCGC	2 cut(s)	35, 395
AspS9I	GGNCC	6 cut(s)	91, 100, 186, 226, 261, 427
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	163
AsuNHI	GCTAGC	1 cut(s)	410
AvaI	CYCGRG	2 cut(s)	372, 493
AvaII	GGWCC	4 cut(s)	100, 226, 261, 427
BalI	TGGCCA	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	392
BbvCI	CCTCAGC	1 cut(s)	116
BccI	CCATC	3 cut(s)	74, 362, 455
BceAI	ACGGC	1 cut(s)	449
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	391, 490
BfaI	CTAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	396
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	4 cut(s)	100, 226, 261, 427
BmeT110I	CYCGRG	2 cut(s)	372, 493
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	6 cut(s)	91, 100, 186, 226, 261, 427
BmiI	GGNNCC	7 cut(s)	107, 250, 262, 263, 339, 394, 429
BmrFI	CCNGG	1 cut(s)	255
BmtI	GCTAGC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
Bpu10I	CCTNAGC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	253, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 258
Bse118I	RCCGGY	2 cut(s)	102, 362
Bse1I	ACTGG	2 cut(s)	149, 246
Bse8I	GATNNNNATC	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	253, 423
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	2 cut(s)	241, 258
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	149, 246
BseRI	GAGGAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	93, 126, 187
BshNI	GGYRCC	1 cut(s)	392
BsiHKCI	CYCGRG	2 cut(s)	372, 493
BsiSI	CCGG	4 cut(s)	103, 255, 363, 390
BslFI	GGGAC	2 cut(s)	274, 413
BslI	CCNNNNNNNGG	2 cut(s)	241, 258
BsmAI	GTCTC	2 cut(s)	391, 490
BsmBI	CGTCTC	2 cut(s)	391, 490
BsmFI	GGGAC	2 cut(s)	274, 413
BsnI	GGCC	3 cut(s)	93, 126, 187
BsoBI	CYCGRG	2 cut(s)	372, 493
Bsp143I	GATC	2 cut(s)	231, 453
Bsp19I	CCATGG	1 cut(s)	423
Bsp68I	TCGCGA	1 cut(s)	473
BspACI	CCGC	5 cut(s)	141, 258, 310, 315, 360
BspANI	GGCC	3 cut(s)	93, 126, 187
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	7 cut(s)	107, 250, 262, 263, 339, 394, 429
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	226, 461
BspT107I	GGYRCC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	2 cut(s)	102, 362
BsrI	ACTGG	2 cut(s)	149, 246
BssAI	RCCGGY	2 cut(s)	102, 362
BssECI	CCNNGG	2 cut(s)	253, 423
BssMI	GATC	2 cut(s)	231, 453
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	6 cut(s)	95, 146, 185, 364, 380, 412
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	35, 395
BstKTI	GATC	2 cut(s)	234, 456
BstMAI	GTCTC	2 cut(s)	391, 490
BstMBI	GATC	2 cut(s)	231, 453
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 154, 255, 359, 470
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	93, 126, 187
BtgI	CCRYGG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
BtuMI	TCGCGA	1 cut(s)	473
Cac8I	GCNNGC	6 cut(s)	95, 146, 185, 364, 380, 412
CfoI	GCGC	2 cut(s)	35, 395
Cfr10I	RCCGGY	2 cut(s)	102, 362
Cfr13I	GGNCC	6 cut(s)	91, 100, 186, 226, 261, 427
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	334, 424, 484
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	116
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	2 cut(s)	233, 455
DpnII	GATC	2 cut(s)	231, 453
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	2 cut(s)	304, 349
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	4 cut(s)	100, 226, 261, 427
Eco88I	CYCGRG	2 cut(s)	372, 493
EcoO109I	RGGNCCY	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	2 cut(s)	391, 490
FaeI	CATG	3 cut(s)	337, 427, 487
FaiI	YATR	5 cut(s)	191, 326, 335, 425, 485
FaqI	GGGAC	2 cut(s)	274, 413
FatI	CATG	3 cut(s)	333, 423, 483
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	2 cut(s)	34, 394
GluI	GCNGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	93, 126, 187
HapII	CCGG	4 cut(s)	103, 255, 363, 390
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	2 cut(s)	35, 395
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	337, 427, 487
Hin6I	GCGC	2 cut(s)	33, 393
HinP1I	GCGC	2 cut(s)	33, 393
HinfI	GANTC	2 cut(s)	84, 197
HpaII	CCGG	4 cut(s)	103, 255, 363, 390
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	202, 236
Hpy188III	TCNNGA	5 cut(s)	224, 372, 451, 472, 495
Hpy99I	CGWCG	2 cut(s)	278, 410
HpyAV	CCTTC	2 cut(s)	239, 445
HpyCH4IV	ACGT	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 154, 255, 359, 470
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	337, 427, 487
HspAI	GCGC	2 cut(s)	33, 393
KasI	GGCGCC	1 cut(s)	392
KflI	GGGWCCC	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	231, 453
LmnI	GCTCC	4 cut(s)	111, 254, 317, 485
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	287
MalI	GATC	2 cut(s)	233, 455
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	2 cut(s)	231, 453
MboII	GAAGA	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	8 cut(s)	38, 119, 125, 172, 281, 351, 368, 479
Mox20I	TGGCCA	1 cut(s)	126
MroNI	GCCGGC	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	4 cut(s)	103, 255, 363, 390
MspR9I	CCNGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	5 cut(s)	103, 154, 255, 359, 470
NaeI	GCCGGC	1 cut(s)	364
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	231, 453
NgoMIV	GCCGGC	1 cut(s)	362
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	3 cut(s)	337, 427, 487
NlaIV	GGNNCC	7 cut(s)	107, 250, 262, 263, 339, 394, 429
NruI	TCGCGA	1 cut(s)	473
PaeR7I	CTCGAG	2 cut(s)	372, 493
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PdiI	GCCGGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	191
PluTI	GGCGCC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
PspN4I	GGNNCC	7 cut(s)	107, 250, 262, 263, 339, 394, 429
PspPI	GGNCC	6 cut(s)	91, 100, 186, 226, 261, 427
PspPPI	RGGWCCY	1 cut(s)	261
RruI	TCGCGA	1 cut(s)	473
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	231, 453
Sau96I	GGNCC	6 cut(s)	91, 100, 186, 226, 261, 427
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	5 cut(s)	159, 231, 290, 384, 437
SfoI	GGCGCC	1 cut(s)	394
Sfr274I	CTCGAG	2 cut(s)	372, 493
SinI	GGWCC	4 cut(s)	100, 226, 261, 427
SlaI	CTCGAG	2 cut(s)	372, 493
SmlI	CTYRAG	2 cut(s)	372, 493
SmoI	CTYRAG	2 cut(s)	372, 493
SsiI	CCGC	5 cut(s)	141, 258, 310, 315, 360
SspDI	GGCGCC	1 cut(s)	392
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	423
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	276, 373, 456, 494
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	4 cut(s)	100, 226, 261, 427
XhoI	CTCGAG	2 cut(s)	372, 493
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.