Rmu_sc0002345.1_g000003

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002345.1
OG0023083
Physical Location & Seq
Reverse (-)
9286 .. 9612
327 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
atgtatgccaaagatctcagacatgtgctgaagaagaagcatcatcatgctaaagggtacaaattagggatggtattctaccttgaagctgcatttggagggagtctatttgagggtctcctgccagatagaatgagtatctatgctactacagcatcacgagaaagttttgcagcatgtcaacatgatcctgctgttcctgcagaatataccacctatttgggagacttgtatagtatttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

81

Amino Acids

9.09

Weight (kDa)

7.9

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 1 - 80 1.2e-15 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023083)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002345.1_g000003
rosa_rugosa Rorug02G0409100
rosa_samantha Rh2BG481300 Rh2DG490100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 122, 219
AlwI GGATC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 89, 173
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 2 cut(s) 76, 185
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 122, 219
BfmI CTRYAG 2 cut(s) 150, 201
BglII AGATCT 1 cut(s) 13
BisI GCNGC 2 cut(s) 90, 174
BlsI GCNGC 2 cut(s) 91, 175
BmsI GCATC 2 cut(s) 49, 164
BsaI GGTCTC 1 cut(s) 122
BseGI GGATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 76, 185
BsmAI GTCTC 2 cut(s) 122, 219
Bso31I GGTCTC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 13, 187
BspCNI CTCAG 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 122
BssMI GATC 2 cut(s) 13, 187
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 2 cut(s) 16, 190
BstMAI GTCTC 2 cut(s) 122, 219
BstMBI GATC 2 cut(s) 13, 187
BstMWI GCNNNNNNNGC 2 cut(s) 152, 200
BstNSI RCATGY 2 cut(s) 26, 180
BstSFI CTRYAG 2 cut(s) 150, 201
BstV1I GCAGC 2 cut(s) 76, 185
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 13
BtsCI GGATG 1 cut(s) 75
Csp6I GTAC 1 cut(s) 58
CviAII CATG 4 cut(s) 23, 47, 177, 185
CviJI RGCY 1 cut(s) 89
CviKI_1 RGCY 1 cut(s) 89
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 15, 189
DpnII GATC 2 cut(s) 13, 187
Eco31I GGTCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 50
FaeI CATG 4 cut(s) 26, 50, 180, 188
FaiI YATR 8 cut(s) 6, 24, 48, 144, 178, 186, 210, 234
FatI CATG 4 cut(s) 22, 46, 176, 184
Fnu4HI GCNGC 2 cut(s) 90, 174
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 90, 174
GluI GCNGC 2 cut(s) 90, 174
Hin1II CATG 4 cut(s) 26, 50, 180, 188
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 159, 243
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 92, 173, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 200
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 4 cut(s) 26, 50, 180, 188
Kzo9I GATC 2 cut(s) 13, 187
LpnPI CCDG 4 cut(s) 134, 138, 204, 213
Lsp1109I GCAGC 2 cut(s) 76, 185
LweI GCATC 2 cut(s) 49, 164
MalI GATC 2 cut(s) 15, 189
MboI GATC 2 cut(s) 13, 187
MboII GAAGA 2 cut(s) 43, 46
MflI RGATCY 1 cut(s) 13
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 2 cut(s) 92, 106
MslI CAYNNNNRTG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 152, 200
NdeII GATC 2 cut(s) 13, 187
NlaIII CATG 4 cut(s) 26, 50, 180, 188
NspI RCATGY 2 cut(s) 26, 180
PciI ACATGT 1 cut(s) 22
PkrI GCNGC 2 cut(s) 91, 175
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PscI ACATGT 1 cut(s) 22
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 2 cut(s) 90, 174
Sau3AI GATC 2 cut(s) 13, 187
SchI GAGTC 1 cut(s) 112
SetI ASST 3 cut(s) 84, 91, 218
SfaNI GCATC 2 cut(s) 49, 164
SfcI CTRYAG 2 cut(s) 150, 201
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 1 cut(s) 62
TasI AATT 1 cut(s) 62
TseI GCWGC 2 cut(s) 89, 173
XceI RCATGY 2 cut(s) 26, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.