Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0023083

Physical Location & Seq

Genomic Coordinates Reverse (-)

71029481 .. 71030302

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG490100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGAACATCATCGTTTTCATGTACGACGATATTGCATCAGACAGAGAAAATTCCAGGCCTGGTGTCATTATCGATCAACAATCGAAATGGTATTGATGTTTACAATGGAGTTCCCAAGGATTATGCATTAGGTGATGTTAATATAGTCAATCTTTTCGCTGGATGCTTGATATATAGTCATTCTATGTATGCCAAAGATCTCAGACATGTGCTGAAGAAGAAGCATCATCATGCTAAAGGGTACAAATTAGGGATGGTATTCTACCTTGAAGCTGCATTTGGAGGGAGTCTATTTGAGGGTCTCCTGCCAGATAGAATGAGTATCTATGCTACTACAGCATCACGAGAAAGTTTTGCAGCATGTCAACATGATCCTGCTGTTCCTGCAGAATATACCACCTATTTGGGAGACTTGTATAGTATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006624 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0051604 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04612 map04142 map04612

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

7.76

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	61 - 142	1.6e-15	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0023083)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002345.1_g000003
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2BG481300 Rh2DG490100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	25, 245
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	55, 60
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	308, 405
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	275, 359
ApoI	RAATTY	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	146
BauI	CACGAG	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	262, 371
BccI	CCATC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	2 cut(s)	57, 62
BcoDI	GTCTC	2 cut(s)	308, 405
BfmI	CTRYAG	2 cut(s)	336, 387
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	276, 360
BlsI	GCNGC	2 cut(s)	277, 361
Bme1390I	CCNGG	2 cut(s)	57, 62
BmrFI	CCNGG	2 cut(s)	57, 62
BmsI	GCATC	4 cut(s)	46, 155, 235, 350
Bsa29I	ATCGAT	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	57, 62
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	170, 261
BseMII	CTCAG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	262, 371
BshFI	GGCC	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	308, 405
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	75, 199, 373
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	75, 199, 373
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	57, 62
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	170, 261
BstKTI	GATC	3 cut(s)	78, 202, 376
BstMAI	GTCTC	2 cut(s)	308, 405
BstMBI	GATC	3 cut(s)	75, 199, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 386
BstNI	CCWGG	2 cut(s)	57, 62
BstNSI	RCATGY	2 cut(s)	212, 366
BstSCI	CCNGG	2 cut(s)	55, 60
BstSFI	CTRYAG	2 cut(s)	336, 387
BstV1I	GCAGC	2 cut(s)	262, 371
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	170, 261
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	24, 244
CviAII	CATG	5 cut(s)	21, 209, 233, 363, 371
CviJI	RGCY	2 cut(s)	60, 275
CviKI_1	RGCY	2 cut(s)	60, 275
CviQI	GTAC	2 cut(s)	24, 244
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	3 cut(s)	77, 201, 375
DpnII	GATC	3 cut(s)	75, 199, 373
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	55, 60
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	5 cut(s)	24, 212, 236, 366, 374
FatI	CATG	5 cut(s)	20, 208, 232, 362, 370
Fnu4HI	GCNGC	2 cut(s)	276, 360
FokI	GGATG	2 cut(s)	177, 268
Fsp4HI	GCNGC	2 cut(s)	276, 360
GluI	GCNGC	2 cut(s)	276, 360
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	24, 212, 236, 366, 374
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HinfI	GANTC	1 cut(s)	289
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	103, 368
Hpy188I	TCNGA	2 cut(s)	42, 206
Hpy188III	TCNNGA	2 cut(s)	345, 429
Hpy8I	GTNNAC	2 cut(s)	103, 368
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	37, 128, 278, 359, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 386
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	5 cut(s)	24, 212, 236, 366, 374
Kzo9I	GATC	3 cut(s)	75, 199, 373
LpnPI	CCDG	9 cut(s)	42, 47, 69, 74, 147, 320, 324, 390, 399
Lsp1109I	GCAGC	2 cut(s)	262, 371
LweI	GCATC	4 cut(s)	46, 155, 235, 350
MalI	GATC	3 cut(s)	77, 201, 375
MboI	GATC	3 cut(s)	75, 199, 373
MboII	GAAGA	2 cut(s)	229, 232
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	51, 248
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	2 cut(s)	278, 292
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	57, 62
MvaI	CCWGG	2 cut(s)	57, 62
MwoI	GCNNNNNNNGC	2 cut(s)	338, 386
NdeII	GATC	3 cut(s)	75, 199, 373
NlaIII	CATG	5 cut(s)	24, 212, 236, 366, 374
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	2 cut(s)	212, 366
PceI	AGGCCT	1 cut(s)	60
PciI	ACATGT	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	277, 361
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PscI	ACATGT	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	55, 60
PspGI	CCWGG	2 cut(s)	55, 60
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	25, 245
RsaNI	GTAC	2 cut(s)	24, 244
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	276, 360
Sau3AI	GATC	3 cut(s)	75, 199, 373
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	57, 62
SetI	ASST	4 cut(s)	136, 270, 277, 404
SfaNI	GCATC	4 cut(s)	46, 155, 235, 350
SfcI	CTRYAG	2 cut(s)	336, 387
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	51, 248
SseBI	AGGCCT	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	55, 60
StyI	CCWWGG	1 cut(s)	117
TaqI	TCGA	2 cut(s)	74, 85
TasI	AATT	2 cut(s)	51, 248
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	2 cut(s)	275, 359
TspDTI	ATGAA	1 cut(s)	9
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	2 cut(s)	212, 366
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.