Rmu_sc0002352.1_g000019

Polygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002352.1
OG0031206
Physical Location & Seq
Reverse (-)
91057 .. 91785
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002352.1_g000019.1.cds

Sequence Viewer

Length: 645 bp
atgatatccttgttcgagttatcgaatgcagccacaacttataatgtgatgaaatatggtgcaaaagcagatgggaaaacagactcaacccaagcatttgtcaagacatgggcagcagcgtgcagctctgctcagacagccaccatgtacgttcccaaaggaaggttcttgctaaaagctgcagtgttcagaggcccttgcaagagtagaattaacgttcagatatacggaaccctgattgcccctactgattattgggctctgggaaactccggctattggatcttattcattaaggtcaatagacttgcagttttcggtggtacactcgacgccaagggagccggcttttgggcttgcaggaaatccggaaagagctgccctgttggagctaggtcgataacgttcaattgggcaaatgacgttgtgattagcggtttagtatccatcaacagtcagcaaactcatcttgtgatcaacagctgcaacaatgtagcggtcagaaacgttaagctggttgctccggatgacagccccaacactgatggcattcatgtgcagagctcaactggtgttactatcactggcgcaaccagcttaacgtttctgaccgctacattgttgcagctgttgatcacaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

214

Amino Acids

22.9

Weight (kDa)

9.68

Isoelectric Point (pI)

23.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031206)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8338829.1_g000001 Rmu_sc0002352.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccIII TCCGGA 2 cut(s) 368, 523
AciI CCGC 3 cut(s) 435, 497, 612
AclI AACGTT 4 cut(s) 216, 404, 507, 602
AclWI GGATC 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 2 cut(s) 149, 325
AfiI CCNNNNNNNGG 3 cut(s) 162, 279, 351
AgsI TTSAA 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 9 cut(s) 126, 179, 378, 392, 483, 514, 564, 597, 628
AluI AGCT 9 cut(s) 126, 179, 378, 392, 483, 514, 564, 597, 628
Alw21I GWGCWC 1 cut(s) 566
AlwI GGATC 1 cut(s) 290
Aor13HI TCCGGA 2 cut(s) 368, 523
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 8 cut(s) 29, 113, 116, 123, 179, 378, 483, 625
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 1 cut(s) 194
BanII GRGCYC 2 cut(s) 262, 566
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 637
BccI CCATC 3 cut(s) 65, 455, 539
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 2 cut(s) 474, 633
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 8 cut(s) 30, 114, 117, 124, 180, 379, 484, 626
BlsI GCNGC 8 cut(s) 31, 115, 118, 125, 181, 380, 485, 627
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 232, 343
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 2 cut(s) 368, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 279, 351
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 574, 589
BseAI TCCGGA 2 cut(s) 368, 523
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 162, 279, 351
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 574, 589
BseXI GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 637
BsgI GTGCAG 2 cut(s) 142, 578
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 566
BsiSI CCGG 4 cut(s) 273, 345, 369, 524
BslI CCNNNNNNNGG 3 cut(s) 162, 279, 351
BsmI GAATGC 2 cut(s) 31, 549
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 2 cut(s) 262, 566
Bsp13I TCCGGA 2 cut(s) 368, 523
Bsp143I GATC 3 cut(s) 282, 474, 633
BspACI CCGC 3 cut(s) 435, 497, 612
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 2 cut(s) 368, 523
BspLI GGNNCC 2 cut(s) 232, 343
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 2 cut(s) 574, 589
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 282, 474, 633
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 121, 346, 358
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 532
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 3 cut(s) 285, 477, 636
BstMBI GATC 3 cut(s) 282, 474, 633
BstMWI GCNNNNNNNGC 3 cut(s) 137, 341, 594
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 637
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 540, 582
Cac8I GCNNGC 3 cut(s) 121, 346, 358
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 148, 324
CviAII CATG 3 cut(s) 108, 145, 554
CviQI GTAC 2 cut(s) 148, 324
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 284, 476, 635
DpnII GATC 3 cut(s) 282, 474, 633
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 262, 566
Eco32I GATATC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 564
EcoICRI GAGCTC 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 194
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 2 cut(s) 262, 566
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 111, 148, 557
FaiI YATR 6 cut(s) 42, 57, 109, 146, 226, 555
FatI CATG 3 cut(s) 107, 144, 553
FbaI TGATCA 2 cut(s) 474, 633
Fnu4HI GCNGC 8 cut(s) 30, 114, 117, 124, 180, 379, 484, 626
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 262, 566
Fsp4HI GCNGC 8 cut(s) 30, 114, 117, 124, 180, 379, 484, 626
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 589
GluI GCNGC 8 cut(s) 30, 114, 117, 124, 180, 379, 484, 626
HaeIII GGCC 1 cut(s) 195
HapII CCGG 4 cut(s) 273, 345, 369, 524
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 3 cut(s) 111, 148, 557
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HinfI GANTC 1 cut(s) 83
HpaII CCGG 4 cut(s) 273, 345, 369, 524
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 5 cut(s) 135, 191, 222, 503, 609
Hpy188III TCNNGA 3 cut(s) 103, 369, 524
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 6 cut(s) 150, 216, 404, 423, 507, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 341, 594
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 6 cut(s) 150, 216, 404, 423, 507, 602
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 3 cut(s) 111, 148, 557
HspAI GCGC 1 cut(s) 588
Kpn2I TCCGGA 2 cut(s) 368, 523
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 474, 633
Kzo9I GATC 3 cut(s) 282, 474, 633
LmnI GCTCC 3 cut(s) 341, 389, 526
Lsp1109I GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 637
MaeI CTAG 1 cut(s) 393
MaeII ACGT 6 cut(s) 150, 216, 404, 423, 507, 602
MaeIII GTNAC 1 cut(s) 574
MalI GATC 3 cut(s) 284, 476, 635
MboI GATC 3 cut(s) 282, 474, 633
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 262, 566
MluCI AATT 2 cut(s) 210, 409
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 1 cut(s) 185
MroI TCCGGA 2 cut(s) 368, 523
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 4 cut(s) 213, 294, 510, 599
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 2 cut(s) 483, 628
MspI CCGG 4 cut(s) 273, 345, 369, 524
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 2 cut(s) 31, 549
MwoI GCNNNNNNNGC 3 cut(s) 137, 341, 594
NaeI GCCGGC 1 cut(s) 346
NdeII GATC 3 cut(s) 282, 474, 633
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 3 cut(s) 111, 148, 557
NlaIV GGNNCC 2 cut(s) 232, 343
PctI GAATGC 2 cut(s) 31, 549
PdiI GCCGGC 1 cut(s) 346
PkrI GCNGC 8 cut(s) 31, 115, 118, 125, 181, 380, 485, 627
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PsiI TTATAA 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 566
Psp1406I AACGTT 4 cut(s) 216, 404, 507, 602
PspN4I GGNNCC 2 cut(s) 232, 343
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 2 cut(s) 483, 628
RsaI GTAC 2 cut(s) 149, 325
RsaNI GTAC 2 cut(s) 148, 324
RseI CAYNNNNRTG 1 cut(s) 554
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 4 cut(s) 213, 294, 510, 599
SatI GCNGC 8 cut(s) 30, 114, 117, 124, 180, 379, 484, 626
Sau3AI GATC 3 cut(s) 282, 474, 633
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 2 cut(s) 262, 566
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 554
Sse9I AATT 2 cut(s) 210, 409
SsiI CCGC 3 cut(s) 435, 497, 612
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 566
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 6 cut(s) 153, 219, 407, 426, 510, 605
TaqI TCGA 4 cut(s) 15, 23, 330, 398
TasI AATT 2 cut(s) 210, 409
Tru1I TTAA 4 cut(s) 213, 294, 510, 599
Tru9I TTAA 4 cut(s) 213, 294, 510, 599
TscAI CASTG 3 cut(s) 189, 547, 589
TseI GCWGC 8 cut(s) 29, 113, 116, 123, 179, 378, 483, 625
TspDTI ATGAA 3 cut(s) 65, 280, 542
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 3 cut(s) 189, 547, 589
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.