Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002360.1

Orthogroup ID

OG0031208

Physical Location & Seq

Genomic Coordinates Forward (+)

80735 .. 82369

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002360.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgcacctggccgctcaagccagagtctggtacgtcatggagaacccctgctcagtccacagcaacatcgccggcctcgttactcttctcgaggcatgtaaatcggccaatcctccgccatcgattgtgtgggcctcgcaggctgacagtggcatgacagatcccgatcttcgtagccagagacagtgtcggcgtgaacctgacccaccacgcaaccttgtttcgatgggaatcagtctctctgataatgatgacgatggggatccctcaactgcatgcctgcactcaagatccgaactgatttctgaaggggtgagaattgcactgaagccttctaagcttcaggcccacaaaagctccactgatttcgtttcttatactcgtgatcacccccttaaacttcaaaccacccatacttctcaattccttggcctgacaccattgtctggcacttggcctgcttcaatgcttcagtgttctgagcttcaggccctcaaaagaagccttggattgcttaagtgtagaggatttcgactcaccaatgaatgcggactggagcgggagctgaccgggattgatgaagcttccttggagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016051 GO:0016053 GO:0016853 GO:0016854 GO:0016857 GO:0019586 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032787 GO:0033481 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046394 GO:0050378 GO:0050829 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0097708 GO:0098542 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

199

Amino Acids

21.82

Weight (kDa)

6.06

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031208)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002360.1_g000016
rosa_samantha	Rh2BG276900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccB7I	CCANNNNNTGG	2 cut(s)	27, 446
AccBSI	CCGCTC	2 cut(s)	14, 559
AciI	CCGC	4 cut(s)	12, 116, 549, 559
AclWI	GGATC	4 cut(s)	155, 257, 270, 285
AcoI	YGGCCR	2 cut(s)	9, 105
AcuI	CTGAAG	5 cut(s)	326, 327, 347, 455, 470
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	27, 446
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	2 cut(s)	404, 465
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	5 cut(s)	340, 357, 484, 565, 584
AluI	AGCT	5 cut(s)	340, 357, 484, 565, 584
Alw26I	GTCTC	2 cut(s)	175, 242
AlwI	GGATC	4 cut(s)	155, 257, 270, 285
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	8 cut(s)	9, 73, 105, 132, 345, 430, 455, 489
AspS9I	GGNCC	3 cut(s)	132, 346, 490
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	3 cut(s)	325, 380, 529
AvaI	CYCGRG	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	381
BccI	CCATC	3 cut(s)	127, 220, 251
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	175, 242
BfrI	CTTAAG	1 cut(s)	515
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	8, 571
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	132, 346, 490
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	8, 571
BpmI	CTGGAG	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	571
Bsa29I	ATCGAT	1 cut(s)	122
BsaBI	GATNNNNATC	3 cut(s)	165, 230, 261
BsaJI	CCNNGG	3 cut(s)	427, 505, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 446
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	558
Bse8I	GATNNNNATC	3 cut(s)	165, 230, 261
BseBI	CCWGG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	427, 505, 588
BseJI	GATNNNNATC	3 cut(s)	165, 230, 261
BseLI	CCNNNNNNNGG	2 cut(s)	27, 446
BseMII	CTCAG	2 cut(s)	66, 471
BseNI	ACTGG	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BshVI	ATCGAT	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	72, 570
BslI	CCNNNNNNNGG	2 cut(s)	27, 446
BsmAI	GTCTC	2 cut(s)	175, 242
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	160, 166, 262, 290, 385
BspACI	CCGC	4 cut(s)	12, 116, 549, 559
BspANI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BspCNI	CTCAG	2 cut(s)	65, 472
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	4 cut(s)	155, 257, 270, 285
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	2 cut(s)	14, 559
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	427, 505, 588
BssMI	GATC	5 cut(s)	160, 166, 262, 290, 385
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	3 cut(s)	427, 505, 588
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	149, 186
Bst6I	CTCTTC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	5 cut(s)	73, 141, 277, 281, 459
BstDEI	CTNAG	3 cut(s)	52, 336, 480
BstKTI	GATC	5 cut(s)	163, 169, 265, 293, 388
BstMAI	GTCTC	2 cut(s)	175, 242
BstMBI	GATC	5 cut(s)	160, 166, 262, 290, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 140, 337
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	2 cut(s)	99, 279
BstSCI	CCNGG	2 cut(s)	6, 569
BstX2I	RGATCY	3 cut(s)	160, 262, 290
BstYI	RGATCY	3 cut(s)	160, 262, 290
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BsuTUI	ATCGAT	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	52
BtsIMutI	CAGTG	5 cut(s)	154, 191, 323, 360, 479
Cac8I	GCNNGC	5 cut(s)	73, 141, 277, 281, 459
CaiI	CAGNNNCTG	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	132, 346, 490
ClaI	ATCGAT	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	4 cut(s)	37, 96, 154, 276
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	52, 336, 480
DpnI	GATC	5 cut(s)	162, 168, 264, 292, 387
DpnII	GATC	5 cut(s)	160, 166, 262, 290, 385
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	9, 105
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	427, 505, 588
Eco57I	CTGAAG	5 cut(s)	326, 327, 347, 455, 470
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	427, 505, 588
ErhI	CCWWGG	3 cut(s)	427, 505, 588
FaeI	CATG	4 cut(s)	40, 99, 157, 279
FaiI	YATR	6 cut(s)	38, 97, 155, 277, 378, 414
FatI	CATG	4 cut(s)	36, 95, 153, 275
FauI	CCCGC	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
HapII	CCGG	2 cut(s)	72, 570
Hin1II	CATG	4 cut(s)	40, 99, 157, 279
HindIII	AAGCTT	2 cut(s)	338, 582
HinfI	GANTC	3 cut(s)	24, 231, 534
HpaII	CCGG	2 cut(s)	72, 570
HphI	GGTGA	3 cut(s)	325, 380, 529
Hpy166II	GTNNAC	2 cut(s)	58, 197
Hpy188I	TCNGA	4 cut(s)	244, 295, 307, 481
Hpy188III	TCNNGA	4 cut(s)	89, 164, 288, 383
Hpy8I	GTNNAC	2 cut(s)	58, 197
HpyAV	CCTTC	2 cut(s)	302, 342
HpyCH4III	ACNGT	2 cut(s)	149, 186
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	4, 275, 283, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 140, 337
HpyF3I	CTNAG	3 cut(s)	52, 336, 480
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	40, 99, 157, 279
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	160, 166, 262, 290, 385
LmnI	GCTCC	3 cut(s)	362, 556, 562
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	5 cut(s)	162, 168, 264, 292, 387
MbiI	CCGCTC	2 cut(s)	14, 559
MboI	GATC	5 cut(s)	160, 166, 262, 290, 385
MboII	GAAGA	2 cut(s)	77, 161
MflI	RGATCY	3 cut(s)	160, 262, 290
MluCI	AATT	2 cut(s)	318, 422
MlyI	GAGTC	2 cut(s)	33, 528
MnlI	CCTC	7 cut(s)	85, 86, 123, 145, 277, 503, 518
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	2 cut(s)	396, 516
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	2 cut(s)	72, 570
MspR9I	CCNGG	2 cut(s)	8, 571
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	17, 140, 337
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	5 cut(s)	160, 166, 262, 290, 385
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	40, 99, 157, 279
NlaIV	GGNNCC	1 cut(s)	264
NspI	RCATGY	2 cut(s)	99, 279
PaeI	GCATGC	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	551
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	231
PflFI	GACNNNGTC	1 cut(s)	186
PflMI	CCANNNNNTGG	2 cut(s)	27, 446
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	32, 528
PpsI	GAGTC	2 cut(s)	32, 528
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	132, 346, 490
PstNI	CAGNNNCTG	1 cut(s)	27
PsuI	RGATCY	3 cut(s)	160, 262, 290
PsyI	GACNNNGTC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	396, 516
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	160, 166, 262, 290, 385
Sau96I	GGNCC	3 cut(s)	132, 346, 490
SchI	GAGTC	2 cut(s)	33, 528
ScrFI	CCNGG	2 cut(s)	8, 571
SetI	ASST	9 cut(s)	9, 36, 202, 219, 342, 359, 486, 567, 586
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	4 cut(s)	15, 89, 286, 515
SmoI	CTYRAG	4 cut(s)	15, 89, 286, 515
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	318, 422
SsiI	CCGC	4 cut(s)	12, 116, 549, 559
StyD4I	CCNGG	2 cut(s)	6, 569
StyI	CCWWGG	3 cut(s)	427, 505, 588
TaaI	ACNGT	2 cut(s)	149, 186
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	90, 122, 224, 532
TasI	AATT	2 cut(s)	318, 422
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	396, 516
Tru9I	TTAA	2 cut(s)	396, 516
TscAI	CASTG	5 cut(s)	154, 191, 330, 367, 479
TspDTI	ATGAA	2 cut(s)	558, 594
TspRI	CASTG	5 cut(s)	154, 191, 330, 367, 479
Tth111I	GACNNNGTC	1 cut(s)	186
Van91I	CCANNNNNTGG	2 cut(s)	27, 446
Vha464I	CTTAAG	1 cut(s)	515
XceI	RCATGY	2 cut(s)	99, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.