Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002360.1

Orthogroup ID

OG0031208

Physical Location & Seq

Genomic Coordinates Forward (+)

80735 .. 82369

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgcacctggccgctcaagccagagtctggtacgtcatggagaacccctgctcagtccacagcaacatcgccggcctcgttactcttctcgaggcatgtaaatcggccaatcctccgccatcgattgtgtgggcctcgcaggctgacagtggcatgacagatcccgatcttcgtagccagagacagtgtcggcgtgaacctgacccaccacgcaaccttgtttcgatgggaatcagtctctctgataatgatgacgatggggatccctcaactgcatgcctgcactcaagatccgaactgatttctgaaggggtgagaattgcactgaagccttctaagcttcaggcccacaaaagctccactgatttcgtttcttatactcgtgatcacccccttaaacttcaaaccacccatacttctcaattccttggcctgacaccattgtctggcacttggcctgcttcaatgcttcagtgttctgagcttcaggccctcaaaagaagccttggattgcttaagtgtagaggatttcgactcaccaatgaatgcggactggagcgggagctgaccgggattgatgaagcttccttggagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016051 GO:0016053 GO:0016853 GO:0016854 GO:0016857 GO:0019586 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032787 GO:0033481 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046394 GO:0050378 GO:0050829 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0097708 GO:0098542 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

199

Amino Acids

21.82

Weight (kDa)

6.06

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031208)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002360.1_g000016
rosa_samantha	Rh2BG276900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccB7I	CCANNNNNTGG	2 cut(s)	27, 446
AccBSI	CCGCTC	2 cut(s)	14, 559
AciI	CCGC	4 cut(s)	12, 116, 549, 559
AclWI	GGATC	4 cut(s)	155, 257, 270, 285
AcoI	YGGCCR	2 cut(s)	9, 105
AcuI	CTGAAG	5 cut(s)	326, 327, 347, 455, 470
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	27, 446
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	2 cut(s)	404, 465
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	5 cut(s)	340, 357, 484, 565, 584
AluI	AGCT	5 cut(s)	340, 357, 484, 565, 584
Alw26I	GTCTC	2 cut(s)	175, 242
AlwI	GGATC	4 cut(s)	155, 257, 270, 285
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	8 cut(s)	9, 73, 105, 132, 345, 430, 455, 489
AspS9I	GGNCC	3 cut(s)	132, 346, 490
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	3 cut(s)	325, 380, 529
AvaI	CYCGRG	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	381
BccI	CCATC	3 cut(s)	127, 220, 251
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	175, 242
BfrI	CTTAAG	1 cut(s)	515
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	8, 571
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	132, 346, 490
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	8, 571
BpmI	CTGGAG	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	571
Bsa29I	ATCGAT	1 cut(s)	122
BsaBI	GATNNNNATC	3 cut(s)	165, 230, 261
BsaJI	CCNNGG	3 cut(s)	427, 505, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 446
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	558
Bse8I	GATNNNNATC	3 cut(s)	165, 230, 261
BseBI	CCWGG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	427, 505, 588
BseJI	GATNNNNATC	3 cut(s)	165, 230, 261
BseLI	CCNNNNNNNGG	2 cut(s)	27, 446
BseMII	CTCAG	2 cut(s)	66, 471
BseNI	ACTGG	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BshVI	ATCGAT	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	72, 570
BslI	CCNNNNNNNGG	2 cut(s)	27, 446
BsmAI	GTCTC	2 cut(s)	175, 242
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	160, 166, 262, 290, 385
BspACI	CCGC	4 cut(s)	12, 116, 549, 559
BspANI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BspCNI	CTCAG	2 cut(s)	65, 472
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	4 cut(s)	155, 257, 270, 285
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	2 cut(s)	14, 559
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	427, 505, 588
BssMI	GATC	5 cut(s)	160, 166, 262, 290, 385
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	3 cut(s)	427, 505, 588
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	149, 186
Bst6I	CTCTTC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	5 cut(s)	73, 141, 277, 281, 459
BstDEI	CTNAG	3 cut(s)	52, 336, 480
BstKTI	GATC	5 cut(s)	163, 169, 265, 293, 388
BstMAI	GTCTC	2 cut(s)	175, 242
BstMBI	GATC	5 cut(s)	160, 166, 262, 290, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 140, 337
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	2 cut(s)	99, 279
BstSCI	CCNGG	2 cut(s)	6, 569
BstX2I	RGATCY	3 cut(s)	160, 262, 290
BstYI	RGATCY	3 cut(s)	160, 262, 290
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
BsuTUI	ATCGAT	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	52
BtsIMutI	CAGTG	5 cut(s)	154, 191, 323, 360, 479
Cac8I	GCNNGC	5 cut(s)	73, 141, 277, 281, 459
CaiI	CAGNNNCTG	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	132, 346, 490
ClaI	ATCGAT	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	4 cut(s)	37, 96, 154, 276
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	52, 336, 480
DpnI	GATC	5 cut(s)	162, 168, 264, 292, 387
DpnII	GATC	5 cut(s)	160, 166, 262, 290, 385
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	9, 105
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	427, 505, 588
Eco57I	CTGAAG	5 cut(s)	326, 327, 347, 455, 470
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	427, 505, 588
ErhI	CCWWGG	3 cut(s)	427, 505, 588
FaeI	CATG	4 cut(s)	40, 99, 157, 279
FaiI	YATR	6 cut(s)	38, 97, 155, 277, 378, 414
FatI	CATG	4 cut(s)	36, 95, 153, 275
FauI	CCCGC	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	8 cut(s)	11, 75, 107, 134, 347, 432, 457, 491
HapII	CCGG	2 cut(s)	72, 570
Hin1II	CATG	4 cut(s)	40, 99, 157, 279
HindIII	AAGCTT	2 cut(s)	338, 582
HinfI	GANTC	3 cut(s)	24, 231, 534
HpaII	CCGG	2 cut(s)	72, 570
HphI	GGTGA	3 cut(s)	325, 380, 529
Hpy166II	GTNNAC	2 cut(s)	58, 197
Hpy188I	TCNGA	4 cut(s)	244, 295, 307, 481
Hpy188III	TCNNGA	4 cut(s)	89, 164, 288, 383
Hpy8I	GTNNAC	2 cut(s)	58, 197
HpyAV	CCTTC	2 cut(s)	302, 342
HpyCH4III	ACNGT	2 cut(s)	149, 186
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	4, 275, 283, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 140, 337
HpyF3I	CTNAG	3 cut(s)	52, 336, 480
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	40, 99, 157, 279
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	160, 166, 262, 290, 385
LmnI	GCTCC	3 cut(s)	362, 556, 562
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	5 cut(s)	162, 168, 264, 292, 387
MbiI	CCGCTC	2 cut(s)	14, 559
MboI	GATC	5 cut(s)	160, 166, 262, 290, 385
MboII	GAAGA	2 cut(s)	77, 161
MflI	RGATCY	3 cut(s)	160, 262, 290
MluCI	AATT	2 cut(s)	318, 422
MlyI	GAGTC	2 cut(s)	33, 528
MnlI	CCTC	7 cut(s)	85, 86, 123, 145, 277, 503, 518
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	2 cut(s)	396, 516
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	2 cut(s)	72, 570
MspR9I	CCNGG	2 cut(s)	8, 571
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	17, 140, 337
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	5 cut(s)	160, 166, 262, 290, 385
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	40, 99, 157, 279
NlaIV	GGNNCC	1 cut(s)	264
NspI	RCATGY	2 cut(s)	99, 279
PaeI	GCATGC	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	551
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	231
PflFI	GACNNNGTC	1 cut(s)	186
PflMI	CCANNNNNTGG	2 cut(s)	27, 446
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	32, 528
PpsI	GAGTC	2 cut(s)	32, 528
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	132, 346, 490
PstNI	CAGNNNCTG	1 cut(s)	27
PsuI	RGATCY	3 cut(s)	160, 262, 290
PsyI	GACNNNGTC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	396, 516
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	160, 166, 262, 290, 385
Sau96I	GGNCC	3 cut(s)	132, 346, 490
SchI	GAGTC	2 cut(s)	33, 528
ScrFI	CCNGG	2 cut(s)	8, 571
SetI	ASST	9 cut(s)	9, 36, 202, 219, 342, 359, 486, 567, 586
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	4 cut(s)	15, 89, 286, 515
SmoI	CTYRAG	4 cut(s)	15, 89, 286, 515
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	318, 422
SsiI	CCGC	4 cut(s)	12, 116, 549, 559
StyD4I	CCNGG	2 cut(s)	6, 569
StyI	CCWWGG	3 cut(s)	427, 505, 588
TaaI	ACNGT	2 cut(s)	149, 186
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	90, 122, 224, 532
TasI	AATT	2 cut(s)	318, 422
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	396, 516
Tru9I	TTAA	2 cut(s)	396, 516
TscAI	CASTG	5 cut(s)	154, 191, 330, 367, 479
TspDTI	ATGAA	2 cut(s)	558, 594
TspRI	CASTG	5 cut(s)	154, 191, 330, 367, 479
Tth111I	GACNNNGTC	1 cut(s)	186
Van91I	CCANNNNNTGG	2 cut(s)	27, 446
Vha464I	CTTAAG	1 cut(s)	515
XceI	RCATGY	2 cut(s)	99, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.