Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002395.1

Orthogroup ID

OG0023085

Physical Location & Seq

Genomic Coordinates Reverse (-)

31552 .. 32554

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002395.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgacacttgttccgcgcaatgctgaggggcagggatggctgagtgcagcaattgaggtggtggaactttctcagtgtatcattcaggtgatggccatgatcattcaatatccctcttttacgtgtaaagctaaagaaactcatcaattgcagttcctcttggcaaaagcaaagttactggaggatccagtgaaggcagtgcgccctttctgcagctaccacattttagtgaggtgcgctgttatggagaagctagccccgaagattagaatgtttcaggagctggaagaccgtgctgacttactttctcaaactgctgggttctctgccactcaagtacaagatgttgagatggttagaatgtttcaggagctggaagaccgtgctgacttactttctcaacctgctgggttctctgccactcaagtacaagatgttgagatggtattgacaaggatgccttcaatatcaatagaagttaaatgcgagactgaaggcaaagaggatatacaagagtcacattgtcacatttcaagcttgagtgacatgcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

184

Amino Acids

20.75

Weight (kDa)

5.02

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023085)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002395.1_g000008
rosa_samantha	Rh1BG389500 Rh1CG402800 Rh1DG420700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccII	CGCG	1 cut(s)	16
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	179, 192
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	339, 429
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	107, 465, 534
AluBI	AGCT	6 cut(s)	131, 216, 253, 283, 373, 537
AluI	AGCT	6 cut(s)	131, 216, 253, 283, 373, 537
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	179, 192
AlwNI	CAGNNNCTG	2 cut(s)	283, 373
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	47, 213
AspLEI	GCGC	3 cut(s)	18, 204, 239
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	184
BbsI	GAAGAC	2 cut(s)	294, 384
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	59, 225
BccI	CCATC	4 cut(s)	30, 85, 346, 436
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	48, 214
BlsI	GCNGC	2 cut(s)	49, 215
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	1 cut(s)	447
BmtI	GCTAGC	1 cut(s)	257
BpiI	GAAGAC	2 cut(s)	294, 384
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	318, 408
BsaAI	YACGTR	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	183, 188
Bse3DI	GCAATG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	41, 462
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	15, 32, 86
BseNI	ACTGG	2 cut(s)	183, 188
BseXI	GCAGC	2 cut(s)	59, 225
BseYI	CCCAGC	2 cut(s)	317, 407
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	99, 184
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	16, 33, 85
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	215
BspMI	ACCTGC	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	2 cut(s)	179, 192
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	183, 188
BssMI	GATC	2 cut(s)	99, 184
Bst4CI	ACNGT	2 cut(s)	293, 383
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	24, 41, 72
BstF5I	GGATG	2 cut(s)	41, 462
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	3 cut(s)	18, 204, 239
BstKTI	GATC	2 cut(s)	102, 187
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	99, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 210
BstNSI	RCATGY	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	59, 225
BstV2I	GAAGAC	2 cut(s)	294, 384
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	41, 462
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	80, 195, 204
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	2 cut(s)	283, 373
CfoI	GCGC	3 cut(s)	18, 204, 239
Csp6I	GTAC	2 cut(s)	338, 428
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	2 cut(s)	97, 547
CviJI	RGCY	9 cut(s)	40, 95, 131, 216, 253, 257, 283, 373, 537
CviKI_1	RGCY	9 cut(s)	40, 95, 131, 216, 253, 257, 283, 373, 537
CviQI	GTAC	2 cut(s)	338, 428
DdeI	CTNAG	3 cut(s)	24, 41, 72
DpnI	GATC	2 cut(s)	101, 186
DpnII	GATC	2 cut(s)	99, 184
EaeI	YGGCCR	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	513
FaeI	CATG	2 cut(s)	100, 550
FaiI	YATR	4 cut(s)	98, 245, 509, 548
FalI	AAGNNNNNCTT	2 cut(s)	445, 477
FatI	CATG	2 cut(s)	96, 546
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	48, 214
FokI	GGATG	2 cut(s)	48, 469
Fsp4HI	GCNGC	2 cut(s)	48, 214
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	3 cut(s)	17, 203, 238
GluI	GCNGC	2 cut(s)	48, 214
GsaI	CCCAGC	2 cut(s)	321, 411
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	18, 204, 239
Hin1II	CATG	2 cut(s)	100, 550
Hin6I	GCGC	3 cut(s)	16, 202, 237
HinP1I	GCGC	3 cut(s)	16, 202, 237
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	1 cut(s)	515
HphI	GGTGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	278, 368
HpyAV	CCTTC	3 cut(s)	187, 471, 488
HpyCH4III	ACNGT	2 cut(s)	293, 383
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	47, 151, 213, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 210
HpyF3I	CTNAG	3 cut(s)	24, 41, 72
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	100, 550
HspAI	GCGC	3 cut(s)	16, 202, 237
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	99, 184
LmnI	GCTCC	2 cut(s)	280, 370
Lsp1109I	GCAGC	2 cut(s)	59, 225
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	4 cut(s)	174, 516, 524, 542
MalI	GATC	2 cut(s)	101, 186
MboI	GATC	2 cut(s)	99, 184
MboII	GAAGA	3 cut(s)	274, 299, 389
MfeI	CAATTG	2 cut(s)	51, 146
MflI	RGATCY	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	51, 146
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	7 cut(s)	19, 49, 124, 167, 175, 225, 496
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	86, 227
Msp20I	TGGCCA	1 cut(s)	95
MunI	CAATTG	2 cut(s)	51, 146
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	37, 210
NdeII	GATC	2 cut(s)	99, 184
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	100, 550
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	516, 524, 542
NspI	RCATGY	1 cut(s)	550
PkrI	GCNGC	2 cut(s)	49, 215
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	123
PspFI	CCCAGC	2 cut(s)	317, 407
PspN4I	GGNNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	215
PstNI	CAGNNNCTG	2 cut(s)	283, 373
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	339, 429
RsaNI	GTAC	2 cut(s)	338, 428
RseI	CAYNNNNRTG	2 cut(s)	86, 227
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	48, 214
Sau3AI	GATC	2 cut(s)	99, 184
SchI	GAGTC	1 cut(s)	524
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	86, 227
SmlI	CTYRAG	3 cut(s)	333, 423, 538
SmoI	CTYRAG	3 cut(s)	333, 423, 538
Sse9I	AATT	2 cut(s)	51, 146
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	293, 383
TaiI	ACGT	1 cut(s)	125
TasI	AATT	2 cut(s)	51, 146
TatI	WGTACW	2 cut(s)	337, 427
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	3 cut(s)	80, 195, 204
TseFI	GTSAC	3 cut(s)	516, 524, 542
TseI	GCWGC	2 cut(s)	47, 213
Tsp45I	GTSAC	3 cut(s)	516, 524, 542
TspRI	CASTG	3 cut(s)	80, 195, 204
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.