Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0023085

Physical Location & Seq

Genomic Coordinates Reverse (-)

51594701 .. 51595430

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG389500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTGAGTGCAGCAATTGGGGTGGTGGAACTTTCTCAGTGTATCATTCAGGTGATGGCCATGATCATTCAATATCCCTCTTTTACGTGCAGTTCCTCTTGGCAAAAGCAAAGTTACTGGAGGATCCAGTGAAGGCAGTGCGCCCTTTCTGCAGCTACCACATTTTAGTGAGCTCGTGCGCTGTTATGGAGAAGCTAGCCCCGAAGGTTAGAATGTTTCAGGAGCTGGAAGACCGTGCTGACTTACTTTCTCAAACTGCTGGGTTCTCTGCCACTCAAGTACAAGATGTTGAGATGGTATTGACAAGGATGCCTTCAATATCAATAGAAGTTAAATGCGAGACTGAAGGCAAAGAGGATATACAAGAGTCACATTGTCACATTTCAAGCTTGAGTGACATGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

5.23

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023085)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002395.1_g000008
rosa_samantha	Rh1BG389500 Rh1CG402800 Rh1DG420700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	119, 132
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	72, 318, 387
AluBI	AGCT	5 cut(s)	156, 174, 196, 226, 390
AluI	AGCT	5 cut(s)	156, 174, 196, 226, 390
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	119, 132
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	12, 153
AspLEI	GCGC	2 cut(s)	144, 182
AsuHPI	GGTGA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	24, 165
BccI	CCATC	2 cut(s)	50, 289
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	2 cut(s)	13, 154
BlsI	GCNGC	2 cut(s)	14, 155
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	300
BmtI	GCTAGC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	88
Bse1I	ACTGG	2 cut(s)	123, 128
BseGI	GGATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	123, 128
BseXI	GCAGC	2 cut(s)	24, 165
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	2 cut(s)	31, 110
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	64, 124
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	119, 132
BsrI	ACTGG	2 cut(s)	123, 128
BssMI	GATC	2 cut(s)	64, 124
BssSI	CACGAG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	6, 37
BstF5I	GGATG	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	144, 182
BstKTI	GATC	2 cut(s)	67, 127
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	64, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	24, 165
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	3 cut(s)	45, 135, 144
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	2 cut(s)	144, 182
Csp6I	GTAC	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	2 cut(s)	62, 400
CviJI	RGCY	8 cut(s)	5, 60, 156, 174, 196, 200, 226, 390
CviKI_1	RGCY	8 cut(s)	5, 60, 156, 174, 196, 200, 226, 390
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	2 cut(s)	6, 37
DpnI	GATC	2 cut(s)	66, 126
DpnII	GATC	2 cut(s)	64, 124
EaeI	YGGCCR	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	176
FaeI	CATG	2 cut(s)	65, 403
FaiI	YATR	4 cut(s)	63, 188, 362, 401
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FatI	CATG	2 cut(s)	61, 399
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	13, 154
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	13, 154
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	2 cut(s)	143, 181
GluI	GCNGC	2 cut(s)	13, 154
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	144, 182
Hin1II	CATG	2 cut(s)	65, 403
Hin6I	GCGC	2 cut(s)	142, 180
HinP1I	GCGC	2 cut(s)	142, 180
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	1 cut(s)	65
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	127, 199, 324, 341
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	12, 91, 153, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	6, 37
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	65, 403
HspAI	GCGC	2 cut(s)	142, 180
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	64, 124
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	36, 104, 141, 206, 212, 246
Lsp1109I	GCAGC	2 cut(s)	24, 165
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	114, 369, 377, 395
MalI	GATC	2 cut(s)	66, 126
MboI	GATC	2 cut(s)	64, 124
MboII	GAAGA	1 cut(s)	242
MfeI	CAATTG	1 cut(s)	16
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	1 cut(s)	16
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	89, 107, 115, 349
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	51, 167
Msp20I	TGGCCA	1 cut(s)	60
MunI	CAATTG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	2 cut(s)	64, 124
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	65, 403
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	3 cut(s)	369, 377, 395
NspI	RCATGY	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	14, 155
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	51, 167
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	13, 154
Sau3AI	GATC	2 cut(s)	64, 124
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	8 cut(s)	55, 90, 158, 176, 198, 210, 228, 392
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	51, 167
SmlI	CTYRAG	2 cut(s)	276, 391
SmoI	CTYRAG	2 cut(s)	276, 391
Sse9I	AATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	90
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	45, 135, 144
TseFI	GTSAC	3 cut(s)	369, 377, 395
TseI	GCWGC	2 cut(s)	12, 153
Tsp45I	GTSAC	3 cut(s)	369, 377, 395
TspRI	CASTG	3 cut(s)	45, 135, 144
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.