Rmu_sc0002417.1_g000002

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002417.1
OG0031210
Physical Location & Seq
Reverse (-)
16930 .. 19740
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atggagacgggaacggggaatccccagtatcttattactgggattggggagggtaaggggatggagaatgaagtcggtcatcagggggagacacagacatcagggggagatgtctgcatgttcgtctcgaatcgtgaaggtggtatggaaggaattcaaggggtatggaaattttctgcaaaagctggttgccaaaaccaggtgatcaaatcaaagctggcttatgtttttgccatgggtattgctaggagaattgctcagtctgggtacgttgtgtatgcagtagactatccaggttttggtctttctgtagggttgcatggtttcatcccaaactttgatgagttggtcgatgatgttattgaacaatttactagtatcaaaggtgtgaaattgattggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

134

Amino Acids

14.3

Weight (kDa)

5.06

Isoelectric Point (pI)

10.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 81 - 128 5.1e-10 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031210)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002417.1_g000002
rosa_samantha Rh6AG426300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 153, 170
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 199, 299
AgsI TTSAA 2 cut(s) 158, 365
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 198, 292
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 2 cut(s) 185, 217
AluI AGCT 2 cut(s) 185, 217
Alw26I GTCTC 2 cut(s) 83, 130
ApoI RAATTY 2 cut(s) 153, 170
Asp700I GAANNNNTTC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 214
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 200, 294
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 83, 130
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 2 cut(s) 246, 375
BfmI CTRYAG 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 200, 294
BmrFI CCNGG 2 cut(s) 200, 294
BmrI ACTGGG 2 cut(s) 19, 48
BmuI ACTGGG 2 cut(s) 19, 48
BplI GAGNNNNNCTC 2 cut(s) 241, 273
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 299
Bse1I ACTGG 2 cut(s) 25, 43
BseBI CCWGG 2 cut(s) 200, 294
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 66, 327
BseLI CCNNNNNNNGG 2 cut(s) 199, 299
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 25, 43
BslI CCNNNNNNNGG 2 cut(s) 199, 299
BsmAI GTCTC 2 cut(s) 83, 130
BsmBI CGTCTC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 25, 43
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 200, 294
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 66, 327
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 2 cut(s) 83, 130
BstMBI GATC 1 cut(s) 204
BstNI CCWGG 2 cut(s) 200, 294
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 198, 292
BstSFI CTRYAG 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 66, 327
Cac8I GCNNGC 1 cut(s) 219
CsiI ACCWGGT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 268
CviAII CATG 3 cut(s) 118, 235, 320
CviJI RGCY 3 cut(s) 185, 217, 221
CviKI_1 RGCY 3 cut(s) 185, 217, 221
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 198, 292
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 3 cut(s) 121, 238, 323
FaiI YATR 7 cut(s) 119, 146, 166, 225, 236, 279, 321
FatI CATG 3 cut(s) 117, 234, 319
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 1 cut(s) 285
FokI GGATG 2 cut(s) 73, 314
FspBI CTAG 2 cut(s) 246, 375
Hin1II CATG 3 cut(s) 121, 238, 323
HinfI GANTC 2 cut(s) 19, 130
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 127, 134
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 131, 143
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 117, 179, 281, 319
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 121, 238, 323
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 1 cut(s) 204
MabI ACCWGGT 1 cut(s) 198
MaeI CTAG 2 cut(s) 246, 375
MaeII ACGT 1 cut(s) 270
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MluCI AATT 5 cut(s) 153, 170, 252, 368, 392
MnlI CCTC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 200, 294
MvaI CCWGG 2 cut(s) 200, 294
NcoI CCATGG 1 cut(s) 234
NdeII GATC 1 cut(s) 204
NlaIII CATG 3 cut(s) 121, 238, 323
NspI RCATGY 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 19, 130
PflMI CCANNNNNTGG 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 198, 292
PspGI CCWGG 2 cut(s) 198, 292
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 204
ScrFI CCNGG 2 cut(s) 200, 294
SetI ASST 7 cut(s) 142, 187, 204, 219, 273, 298, 388
SexAI ACCWGGT 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 309
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 5 cut(s) 153, 170, 252, 368, 392
SspMI CTAG 2 cut(s) 246, 375
StyD4I CCNGG 2 cut(s) 198, 292
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 128, 351
TaqII GACCGA 1 cut(s) 65
TasI AATT 5 cut(s) 153, 170, 252, 368, 392
TfiI GAWTC 2 cut(s) 19, 130
TspDTI ATGAA 2 cut(s) 84, 316
Van91I CCANNNNNTGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 153, 170
XceI RCATGY 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 246, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.