Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002505.1

Orthogroup ID

OG0025241

Physical Location & Seq

Genomic Coordinates Forward (+)

46582 .. 50936

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgcttcggtggcagcaggctggaacgcagggctgcaggaagggggcagcaggggctgctgtgcaaggttgcaagcacacgggcgctcgggctgcagcgaaggctcggctagctcgggctaggggctgctttgtgaatgagttttggttttctgttttgtggttagagtcgggctctatgctagctagaggtgataaggcgtttgttggtttactgtcaccagagcatgcagagattttggcatgtactttgactgttcgtttcatactggaccatgattttcttcctgctatcttggaaacagactcacaagttgtgcaggggcagttggctcatagagacagacacaatacctcggtcttgggaaggttatttgggtttagcgccctgacttctggactggcatttggcctcgccgatgtttgtgatttgctgccggacgggtgtttgatgctattgctcggggagttttgctgttggcggactggtttctgcaacgggttccagtgggatgtcttgaggcgtagtaatcgtgttgtcgtgaacgacgtggatcggggcggcgcaagtcttgtcggagtgggatggcgacatggcgtgaactcggcactgtgcctgcgatcaatgggtgaaggaagtccgggttcaagtcgtcgtgcagaagacgcagaaacggcagaggctaggaggtttcgtcggagcctgttaagggcatcatctccgagtgcgtccgccactaaggttgagtttcaggttaaagataacgacctcttcggctttgagattatcggcatcgcctctatccctgcctccgaaatcccctccggaaaattcatttacggctggtatgaaattattagacccaccggaaagccttcgaagcctaattgcgctactaaggttgagttaaagttcacgcccttcgacaaaaacccggtctacaagcacggtattgtcggcgatcctcaccagggcaataaacctttccggcgacctatgatatctccaacgacctttttgggggtctcatacgaggttttaagaaaagtccactgggcggcggccgatgacaggaatccaatgaaagttggccagaaaccagggaccggcgacctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

372

Amino Acids

40.61

Weight (kDa)

9.31

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025241)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006329
rosa_multiflora	Rmu_sc0002505.1_g000015
rosa_samantha	Rh7BG341000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	939
AccIII	TCCGGA	1 cut(s)	824
AciI	CCGC	5 cut(s)	481, 561, 732, 1058, 1061
AclWI	GGATC	2 cut(s)	561, 956
AcoI	YGGCCR	2 cut(s)	1062, 1090
AcsI	RAATTY	1 cut(s)	830
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	6 cut(s)	709, 971, 1020, 1057, 1071, 1106
AgsI	TTSAA	1 cut(s)	648
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	969, 1099
AluBI	AGCT	2 cut(s)	113, 185
AluI	AGCT	2 cut(s)	113, 185
Alw26I	GTCTC	2 cut(s)	333, 1030
AlwI	GGATC	2 cut(s)	561, 956
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	3 cut(s)	87, 114, 461
Aor13HI	TCCGGA	1 cut(s)	824
AoxI	GGCC	3 cut(s)	409, 1062, 1090
ApeKI	GCWGC	8 cut(s)	13, 33, 47, 56, 92, 95, 126, 433
ApoI	RAATTY	1 cut(s)	830
ArsI	GACNNNNNNTTYG	2 cut(s)	921, 953
Asp700I	GAANNNNTTC	1 cut(s)	874
AspLEI	GCGC	4 cut(s)	86, 386, 566, 893
AspS9I	GGNCC	2 cut(s)	271, 1104
AsuC2I	CCSGG	2 cut(s)	642, 935
AsuHPI	GGTGA	4 cut(s)	203, 210, 641, 959
AsuII	TTCGAA	1 cut(s)	878
AsuNHI	GCTAGC	2 cut(s)	109, 181
AvaI	CYCGRG	3 cut(s)	87, 114, 461
AvaII	GGWCC	2 cut(s)	271, 1104
BalI	TGGCCA	1 cut(s)	1092
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	8 cut(s)	20, 25, 43, 59, 79, 107, 113, 420
BccI	CCATC	1 cut(s)	579
BceAI	ACGGC	2 cut(s)	690, 856
BciT130I	CCWGG	2 cut(s)	971, 1101
BcnI	CCSGG	2 cut(s)	642, 935
BcoDI	GTCTC	2 cut(s)	333, 1030
BfaI	CTAG	5 cut(s)	110, 120, 182, 186, 684
BfmI	CTRYAG	2 cut(s)	34, 93
BfoI	RGCGCY	2 cut(s)	87, 387
Bme1390I	CCNGG	4 cut(s)	642, 935, 971, 1101
Bme18I	GGWCC	2 cut(s)	271, 1104
BmeT110I	CYCGRG	3 cut(s)	87, 114, 461
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	2 cut(s)	271, 1104
BmiI	GGNNCC	3 cut(s)	503, 701, 1105
BmrFI	CCNGG	4 cut(s)	642, 935, 971, 1101
BmrI	ACTGGG	1 cut(s)	1063
BmsI	GCATC	3 cut(s)	441, 722, 801
BmtI	GCTAGC	2 cut(s)	113, 185
BmuI	ACTGGG	1 cut(s)	1063
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
Bpu14I	TTCGAA	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	2 cut(s)	642, 935
BsaI	GGTCTC	1 cut(s)	1030
BsaJI	CCNNGG	3 cut(s)	354, 970, 1100
BsaWI	WCCGGW	2 cut(s)	824, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	6 cut(s)	709, 971, 1020, 1057, 1071, 1106
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	5 cut(s)	273, 405, 490, 505, 1058
BseAI	TCCGGA	1 cut(s)	824
BseBI	CCWGG	2 cut(s)	971, 1101
BseDI	CCNNGG	3 cut(s)	354, 970, 1100
BseGI	GGATG	2 cut(s)	517, 590
BseLI	CCNNNNNNNGG	6 cut(s)	709, 971, 1020, 1057, 1071, 1106
BseNI	ACTGG	5 cut(s)	273, 405, 490, 505, 1058
BseX3I	CGGCCG	1 cut(s)	1062
BseXI	GCAGC	8 cut(s)	20, 25, 43, 59, 79, 107, 113, 420
BsgI	GTGCAG	2 cut(s)	338, 678
Bsh1285I	CGRYCG	1 cut(s)	1065
BshFI	GGCC	3 cut(s)	411, 1064, 1092
BsiEI	CGRYCG	1 cut(s)	1065
BsiHKCI	CYCGRG	3 cut(s)	87, 114, 461
BsiSI	CCGG	7 cut(s)	437, 641, 825, 867, 935, 988, 1107
BslI	CCNNNNNNNGG	6 cut(s)	709, 971, 1020, 1057, 1071, 1106
BsmAI	GTCTC	2 cut(s)	333, 1030
BsnI	GGCC	3 cut(s)	411, 1064, 1092
Bso31I	GGTCTC	1 cut(s)	1030
BsoBI	CYCGRG	3 cut(s)	87, 114, 461
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	824
Bsp143I	GATC	3 cut(s)	553, 620, 961
BspACI	CCGC	5 cut(s)	481, 561, 732, 1058, 1061
BspANI	GGCC	3 cut(s)	411, 1064, 1092
BspEI	TCCGGA	1 cut(s)	824
BspLI	GGNNCC	3 cut(s)	503, 701, 1105
BspMAI	CTGCAG	2 cut(s)	38, 97
BspOI	GCTAGC	2 cut(s)	113, 185
BspPI	GGATC	2 cut(s)	561, 956
BspT104I	TTCGAA	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	1030
BsrFI	RCCGGY	1 cut(s)	1106
BsrI	ACTGG	5 cut(s)	273, 405, 490, 505, 1058
BssAI	RCCGGY	1 cut(s)	1106
BssECI	CCNNGG	3 cut(s)	354, 970, 1100
BssMI	GATC	3 cut(s)	553, 620, 961
Bst2UI	CCWGG	2 cut(s)	971, 1101
Bst4CI	ACNGT	4 cut(s)	216, 256, 612, 950
Bst6I	CTCTTC	1 cut(s)	776
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	878
BstC8I	GCNNGC	6 cut(s)	18, 74, 111, 183, 228, 617
BstDEI	CTNAG	2 cut(s)	738, 897
BstF5I	GGATG	2 cut(s)	517, 590
BstH2I	RGCGCY	2 cut(s)	87, 387
BstHHI	GCGC	4 cut(s)	86, 386, 566, 893
BstKTI	GATC	3 cut(s)	556, 623, 964
BstMAI	GTCTC	2 cut(s)	333, 1030
BstMBI	GATC	3 cut(s)	553, 620, 961
BstMCI	CGRYCG	1 cut(s)	1065
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 53, 56, 92, 101, 110, 665, 674, 880
BstNI	CCWGG	2 cut(s)	971, 1101
BstNSI	RCATGY	2 cut(s)	230, 246
BstSCI	CCNGG	4 cut(s)	640, 933, 969, 1099
BstSFI	CTRYAG	2 cut(s)	34, 93
BstV1I	GCAGC	8 cut(s)	20, 25, 43, 59, 79, 107, 113, 420
BstV2I	GAAGAC	1 cut(s)	669
BstZI	CGGCCG	1 cut(s)	1062
BsuRI	GGCC	3 cut(s)	411, 1064, 1092
BtgZI	GCGATG	1 cut(s)	778
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	517, 590
BtsIMutI	CAGTG	3 cut(s)	512, 608, 1051
Cac8I	GCNNGC	6 cut(s)	18, 74, 111, 183, 228, 617
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	4 cut(s)	86, 386, 566, 893
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr13I	GGNCC	2 cut(s)	271, 1104
CseI	GACGC	2 cut(s)	674, 717
Csp6I	GTAC	1 cut(s)	246
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	4 cut(s)	227, 243, 275, 593
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	738, 897
DpnI	GATC	3 cut(s)	555, 622, 963
DpnII	GATC	3 cut(s)	553, 620, 961
EaeI	YGGCCR	2 cut(s)	1062, 1090
EagI	CGGCCG	1 cut(s)	1062
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
EciI	GGCGGA	2 cut(s)	496, 721
EclXI	CGGCCG	1 cut(s)	1062
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	1030
Eco32I	GATATC	1 cut(s)	1002
Eco47I	GGWCC	2 cut(s)	271, 1104
Eco52I	CGGCCG	1 cut(s)	1062
Eco88I	CYCGRG	3 cut(s)	87, 114, 461
EcoRII	CCWGG	2 cut(s)	969, 1099
EcoRV	GATATC	1 cut(s)	1002
EcoT38I	GRGCYC	1 cut(s)	176
FaeI	CATG	4 cut(s)	230, 246, 278, 596
FatI	CATG	4 cut(s)	226, 242, 274, 592
FblI	GTMKAC	1 cut(s)	939
FokI	GGATG	2 cut(s)	524, 597
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	5 cut(s)	110, 120, 182, 186, 684
GlaI	GCGC	4 cut(s)	85, 385, 565, 892
HaeII	RGCGCY	2 cut(s)	87, 387
HaeIII	GGCC	3 cut(s)	411, 1064, 1092
HapII	CCGG	7 cut(s)	437, 641, 825, 867, 935, 988, 1107
HgaI	GACGC	2 cut(s)	674, 717
HhaI	GCGC	4 cut(s)	86, 386, 566, 893
Hin1II	CATG	4 cut(s)	230, 246, 278, 596
Hin6I	GCGC	4 cut(s)	84, 384, 564, 891
HinP1I	GCGC	4 cut(s)	84, 384, 564, 891
HinfI	GANTC	3 cut(s)	167, 305, 1075
HpaII	CCGG	7 cut(s)	437, 641, 825, 867, 935, 988, 1107
HphI	GGTGA	4 cut(s)	203, 210, 641, 959
Hpy166II	GTNNAC	6 cut(s)	212, 544, 601, 915, 940, 1051
Hpy188I	TCNGA	4 cut(s)	578, 699, 723, 814
Hpy188III	TCNNGA	4 cut(s)	396, 517, 541, 825
Hpy8I	GTNNAC	6 cut(s)	212, 544, 601, 915, 940, 1051
Hpy99I	CGWCG	3 cut(s)	551, 657, 699
HpyAV	CCTTC	6 cut(s)	34, 94, 360, 626, 885, 931
HpyCH4III	ACNGT	4 cut(s)	216, 256, 612, 950
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	8 cut(s)	36, 64, 72, 95, 230, 319, 495, 659
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 53, 56, 92, 101, 110, 665, 674, 880
HpyF3I	CTNAG	2 cut(s)	738, 897
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	4 cut(s)	230, 246, 278, 596
HspAI	GCGC	4 cut(s)	84, 384, 564, 891
Kpn2I	TCCGGA	1 cut(s)	824
Kzo9I	GATC	3 cut(s)	553, 620, 961
LmnI	GCTCC	1 cut(s)	699
Lsp1109I	GCAGC	8 cut(s)	20, 25, 43, 59, 79, 107, 113, 420
LweI	GCATC	3 cut(s)	441, 722, 801
MaeI	CTAG	5 cut(s)	110, 120, 182, 186, 684
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	555, 622, 963
MboI	GATC	3 cut(s)	553, 620, 961
MboII	GAAGA	3 cut(s)	275, 674, 763
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	1092
MluCI	AATT	3 cut(s)	830, 852, 886
MluNI	TGGCCA	1 cut(s)	1092
MlyI	GAGTC	2 cut(s)	176, 299
MmeI	TCCRAC	3 cut(s)	556, 677, 1031
Mox20I	TGGCCA	1 cut(s)	1092
MroI	TCCGGA	1 cut(s)	824
MroXI	GAANNNNTTC	1 cut(s)	874
MscI	TGGCCA	1 cut(s)	1092
MseI	TTAA	4 cut(s)	707, 756, 908, 1040
Msp20I	TGGCCA	1 cut(s)	1092
MspI	CCGG	7 cut(s)	437, 641, 825, 867, 935, 988, 1107
MspR9I	CCNGG	4 cut(s)	642, 935, 971, 1101
MvaI	CCWGG	2 cut(s)	971, 1101
MwoI	GCNNNNNNNGC	9 cut(s)	10, 53, 56, 92, 101, 110, 665, 674, 880
NciI	CCSGG	2 cut(s)	642, 935
NdeII	GATC	3 cut(s)	553, 620, 961
NheI	GCTAGC	2 cut(s)	109, 181
NlaIII	CATG	4 cut(s)	230, 246, 278, 596
NlaIV	GGNNCC	3 cut(s)	503, 701, 1105
NmeAIII	GCCGAG	2 cut(s)	85, 584
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	2 cut(s)	230, 246
NspV	TTCGAA	1 cut(s)	878
PaeI	GCATGC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	1 cut(s)	1075
PleI	GAGTC	2 cut(s)	175, 299
PpsI	GAGTC	2 cut(s)	175, 299
Psp6I	CCWGG	2 cut(s)	969, 1099
PspGI	CCWGG	2 cut(s)	969, 1099
PspN4I	GGNNCC	3 cut(s)	503, 701, 1105
PspPI	GGNCC	2 cut(s)	271, 1104
PstI	CTGCAG	2 cut(s)	38, 97
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	707, 756, 908, 1040
Sau3AI	GATC	3 cut(s)	553, 620, 961
Sau96I	GGNCC	2 cut(s)	271, 1104
SchI	GAGTC	2 cut(s)	176, 299
ScrFI	CCNGG	4 cut(s)	642, 935, 971, 1101
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	3 cut(s)	441, 722, 801
SfcI	CTRYAG	2 cut(s)	34, 93
SfuI	TTCGAA	1 cut(s)	878
SinI	GGWCC	2 cut(s)	271, 1104
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	3 cut(s)	830, 852, 886
SsiI	CCGC	5 cut(s)	481, 561, 732, 1058, 1061
SspMI	CTAG	5 cut(s)	110, 120, 182, 186, 684
StyD4I	CCNGG	4 cut(s)	640, 933, 969, 1099
TaaI	ACNGT	4 cut(s)	216, 256, 612, 950
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	2 cut(s)	878, 924
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	830, 852, 886
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	3 cut(s)	564, 1061, 1064
TfiI	GAWTC	1 cut(s)	1075
Tru1I	TTAA	4 cut(s)	707, 756, 908, 1040
Tru9I	TTAA	4 cut(s)	707, 756, 908, 1040
TscAI	CASTG	3 cut(s)	512, 615, 1058
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	8 cut(s)	13, 33, 47, 56, 92, 95, 126, 433
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	4 cut(s)	253, 823, 864, 1097
TspRI	CASTG	3 cut(s)	512, 615, 1058
VpaK11BI	GGWCC	2 cut(s)	271, 1104
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	2 cut(s)	230, 246
XmiI	GTMKAC	1 cut(s)	939
XmnI	GAANNNNTTC	1 cut(s)	874
XspI	CTAG	5 cut(s)	110, 120, 182, 186, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.