Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

OG0025535

Physical Location & Seq

Genomic Coordinates Reverse (-)

68669 .. 68989

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggcaagtcttagctacattgtttacgtgttggctagcctattcaacctaattggcttccttctttacggtcatcatgatcatcctgatcagtactccagtagtacttgtatagaacacaatcataataaggtggcgttgtttgtgtttggggactcaccatttgaggctggaaacaaccaataccttcctaatataaccgtagaagaagacatagcgatagcctggccatatggagaaacatacttccaccatcccactggaagatacagcgatgggcgtattgtcccagattttattggtaagtgcatgagccgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

106

Amino Acids

12.03

Weight (kDa)

5.47

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025535)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002506.1_g000019 Rmu_sc0004897.1_g000006 Rmu_sc0008622.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	227
AfaI	GTAC	2 cut(s)	95, 106
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
AoxI	GGCC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AsuHPI	GGTGA	1 cut(s)	150
AsuNHI	GCTAGC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	2 cut(s)	261, 269
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	2 cut(s)	79, 88
BfaI	CTAG	1 cut(s)	36
BmcAI	AGTACT	2 cut(s)	95, 106
Bme1390I	CCNGG	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	226
BmtI	GCTAGC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	99, 265
BseBI	CCWGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	82, 253
BseNI	ACTGG	2 cut(s)	99, 265
BshFI	GGCC	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	167, 272
BsmFI	GGGAC	2 cut(s)	167, 272
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	79, 88
BspANI	GGCC	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	99, 265
BssMI	GATC	2 cut(s)	79, 88
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	71, 202
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	82, 253
BstKTI	GATC	2 cut(s)	82, 91
BstMBI	GATC	2 cut(s)	79, 88
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	82, 253
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	94, 105
CviAII	CATG	2 cut(s)	77, 310
CviJI	RGCY	8 cut(s)	15, 35, 39, 57, 170, 224, 229, 315
CviKI_1	RGCY	8 cut(s)	15, 35, 39, 57, 170, 224, 229, 315
CviQI	GTAC	2 cut(s)	94, 105
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	81, 90
DpnII	GATC	2 cut(s)	79, 88
EaeI	YGGCCR	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	80, 313
FaiI	YATR	9 cut(s)	78, 113, 126, 197, 215, 232, 234, 244, 311
FaqI	GGGAC	2 cut(s)	167, 272
FatI	CATG	2 cut(s)	76, 309
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	79, 88
FokI	GGATG	2 cut(s)	69, 240
FspBI	CTAG	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	80, 313
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	77, 86
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	71, 197
HpyCH4III	ACNGT	2 cut(s)	71, 202
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	80, 313
Ksp22I	TGATCA	2 cut(s)	79, 88
Kzo9I	GATC	2 cut(s)	79, 88
LpnPI	CCDG	7 cut(s)	99, 112, 156, 211, 238, 246, 303
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	27
MalI	GATC	2 cut(s)	81, 90
MboI	GATC	2 cut(s)	79, 88
MboII	GAAGA	3 cut(s)	218, 221, 276
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	1 cut(s)	160
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
Msp20I	TGGCCA	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	79, 88
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	80, 313
PagI	TCATGA	1 cut(s)	76
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	95, 106
RsaNI	GTAC	2 cut(s)	94, 105
Sau3AI	GATC	2 cut(s)	79, 88
ScaI	AGTACT	2 cut(s)	95, 106
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	5 cut(s)	17, 30, 51, 135, 189
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	71, 202
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	51
TatI	WGTACW	2 cut(s)	93, 104
TscAI	CASTG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	2 cut(s)	95, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.