Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008622.1

Orthogroup ID

OG0025535

Physical Location & Seq

Genomic Coordinates Forward (+)

54790 .. 55131

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008622.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggcaagtcttagctacattgtttatgtgttggcaagcctactcaacccagttagcttccttctttatgatcatcatagtcggtatactggtagtagtaatagtagtatagaacatgatgatcaatataaggtggcattgtttgtgttcggagactcgttatttgaggctggcaacaatgggtaccttcctaatattaccacagagctagacccagcaatagcctggccatatggagaaaccttcttccactatccgaccggaagattctcggacggacgcatagtccccgatttcatcggtaaaatagtattctttcaatcctttgatccatctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

4.66

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025535)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002506.1_g000019 Rmu_sc0004897.1_g000006 Rmu_sc0008622.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	227
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	320
AhdI	GACNNNNNGTC	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	15, 57, 208
AluI	AGCT	3 cut(s)	15, 57, 208
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp718I	GGTACC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	183
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	2 cut(s)	70, 121
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	50, 94
BseBI	CCWGG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	50, 94
BseYI	CCCAGC	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	70, 121, 328
BspANI	GGCC	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	50, 94
BssMI	GATC	3 cut(s)	70, 121, 328
BssNAI	GTATAC	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	37, 172
BstDEI	CTNAG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	73, 124, 331
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	70, 121, 328
BstMCI	CGRYCG	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	37, 172
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	7 cut(s)	15, 39, 57, 170, 208, 224, 229
CviKI_1	RGCY	7 cut(s)	15, 39, 57, 170, 208, 224, 229
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	72, 123, 330
DpnII	GATC	3 cut(s)	70, 121, 328
DriI	GACNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	70, 121
FblI	GTMKAC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	2 cut(s)	155, 267
HpaII	CCGG	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	152, 258, 274
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	3 cut(s)	71, 197, 253
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	187
Ksp22I	TGATCA	2 cut(s)	70, 121
Kzo9I	GATC	3 cut(s)	70, 121, 328
LpnPI	CCDG	7 cut(s)	63, 75, 156, 211, 228, 238, 274
MaeI	CTAG	1 cut(s)	209
MalI	GATC	3 cut(s)	72, 123, 330
MboI	GATC	3 cut(s)	70, 121, 328
MboII	GAAGA	2 cut(s)	238, 276
MlsI	TGGCCA	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	1 cut(s)	160
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	1 cut(s)	340
Msp20I	TGGCCA	1 cut(s)	229
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	70, 121, 328
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	340
Sau3AI	GATC	3 cut(s)	70, 121, 328
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	6 cut(s)	17, 59, 135, 189, 210, 245
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	286
TspGWI	ACGGA	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.