Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004897.1

Orthogroup ID

OG0025535

Physical Location & Seq

Genomic Coordinates Reverse (-)

29133 .. 30218

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004897.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggcaagtctgagctacgttgtttatttgttggccagcctattcaacccaatcagcttccttctatatggtcatcatgatcatcgtggtgatcagcactccaatagtagtagtatagaacacaatcaaaataaggtggcgttgtttgtgtttggggactcaccatttgagcccggcaactatcagtaccttcctaatgttactgtagaggatgatgaagcaatagcctggccatatggaatgaccttcttccaccatcccaccggaagattttccgatggacgtattgtccctgatttcattgctaagtttgtaaagctgcctatgctttcaccatacctgcaacccggtcaacatgatttcatcgatggatctaactttgcttcagctggagctggagttcttgaaacgtctgactctgaggtgagtattgattatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

4.81

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025535)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002506.1_g000019 Rmu_sc0004897.1_g000006 Rmu_sc0008622.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	2 cut(s)	33, 230
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	46, 407
AhdI	GACNNNNNGTC	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	5 cut(s)	15, 57, 319, 389, 395
AluI	AGCT	5 cut(s)	15, 57, 319, 389, 395
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	33, 230
ApeKI	GCWGC	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	271
AsuC2I	CCSGG	2 cut(s)	174, 348
AsuHPI	GGTGA	4 cut(s)	101, 153, 324, 436
BalI	TGGCCA	2 cut(s)	35, 232
BanII	GRGCYC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	264, 272, 362
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	2 cut(s)	79, 91
BcnI	CCSGG	2 cut(s)	174, 348
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	174, 229, 348
BmeRI	GACNNNNNGTC	1 cut(s)	287
BmrFI	CCNGG	3 cut(s)	174, 229, 348
BpmI	CTGGAG	2 cut(s)	411, 417
BpuMI	CCSGG	2 cut(s)	174, 348
Bsa29I	ATCGAT	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	366
BseGI	GGATG	2 cut(s)	217, 256
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	35, 232
BshVI	ATCGAT	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	174, 264, 348
BslFI	GGGAC	2 cut(s)	170, 275
BsmFI	GGGAC	2 cut(s)	170, 275
BsnI	GGCC	2 cut(s)	35, 232
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	79, 91, 371
BspANI	GGCC	2 cut(s)	35, 232
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	3 cut(s)	79, 91, 371
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	3 cut(s)	11, 306, 420
BstF5I	GGATG	2 cut(s)	217, 256
BstKTI	GATC	3 cut(s)	82, 94, 374
BstMBI	GATC	3 cut(s)	79, 91, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	3 cut(s)	172, 227, 346
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	35, 232
BsuTUI	ATCGAT	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	217, 256
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	77, 356
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	11, 306, 420
DpnI	GATC	3 cut(s)	81, 93, 373
DpnII	GATC	3 cut(s)	79, 91, 371
DriI	GACNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	2 cut(s)	33, 230
Eam1105I	GACNNNNNGTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	80, 359
FaqI	GGGAC	2 cut(s)	170, 275
FatI	CATG	2 cut(s)	76, 355
FauNDI	CATATG	1 cut(s)	235
FbaI	TGATCA	2 cut(s)	79, 91
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	2 cut(s)	224, 243
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
GsuI	CTGGAG	2 cut(s)	411, 417
HaeIII	GGCC	2 cut(s)	35, 232
HapII	CCGG	3 cut(s)	174, 264, 348
Hin1II	CATG	2 cut(s)	80, 359
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	2 cut(s)	158, 416
HpaII	CCGG	3 cut(s)	174, 264, 348
HphI	GGTGA	4 cut(s)	101, 153, 324, 436
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	12, 277, 415, 421
Hpy188III	TCNNGA	2 cut(s)	77, 404
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	71, 200, 256
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	3 cut(s)	18, 283, 410
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	3 cut(s)	11, 306, 420
HpySE526I	ACGT	3 cut(s)	18, 283, 410
Hsp92II	CATG	2 cut(s)	80, 359
Ksp22I	TGATCA	2 cut(s)	79, 91
Kzo9I	GATC	3 cut(s)	79, 91, 371
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	1 cut(s)	306
MaeII	ACGT	3 cut(s)	18, 283, 410
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	81, 93, 373
MboI	GATC	3 cut(s)	79, 91, 371
MboII	GAAGA	2 cut(s)	241, 279
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	2 cut(s)	35, 232
MluNI	TGGCCA	2 cut(s)	35, 232
MlyI	GAGTC	2 cut(s)	152, 410
MnlI	CCTC	2 cut(s)	202, 415
Mox20I	TGGCCA	2 cut(s)	35, 232
MroXI	GAANNNNTTC	1 cut(s)	271
MscI	TGGCCA	2 cut(s)	35, 232
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	2 cut(s)	35, 232
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	3 cut(s)	174, 264, 348
MspR9I	CCNGG	3 cut(s)	174, 229, 348
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	2 cut(s)	174, 348
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	79, 91, 371
NlaIII	CATG	2 cut(s)	80, 359
PagI	TCATGA	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	2 cut(s)	152, 410
PpsI	GAGTC	2 cut(s)	152, 410
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	3 cut(s)	79, 91, 371
SchI	GAGTC	2 cut(s)	152, 410
ScrFI	CCNGG	3 cut(s)	174, 229, 348
SduI	GDGCHC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	172, 227, 346
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	3 cut(s)	21, 286, 413
TaqI	TCGA	1 cut(s)	366
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	231, 289, 352
XmnI	GAANNNNTTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.