Rmu_sc0002519.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002519.1
OG0031212
Physical Location & Seq
Forward (+)
7770 .. 8343
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002519.1_g000002.1.cds

Sequence Viewer

Length: 513 bp
atgacgcgctccaaaaatgaatacctcaatgaggaagacccaagaaaactatgggtagaacttgagcagcgatttggcaacgttcgtgactccctacttcctgatttagaagtgcgatggcatagcctccgcttttgtgatttcaagtctgtgcttgattataacgcggaggctcttggtatcaagtctctgatggagtattgtggccaagccataactgatacgatgttgatcgagaaaactctctctaccttccccgtctctgcattgatgatttcaaagaattatcgcattgatgtaaatgcaggacgtatcacaagaactataatgctacacccgtgggaactaagcctattccggagtctaactatagtcacgcccccaatggaggacgcaaggagcgaaaccctaagagtagggacaattatggacattctggtccatatgttcgccctaaagaggaaggaaatagccaagagaggcgtgcacggaaccgtggaggtcaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

170

Amino Acids

19.71

Weight (kDa)

6.91

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031212)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002519.1_g000002 Rmu_sc0003266.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AasI GACNNNNNNGTC 1 cut(s) 437
AccII CGCG 2 cut(s) 7, 167
AccIII TCCGGA 1 cut(s) 357
AciI CCGC 2 cut(s) 130, 167
AclI AACGTT 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 31, 388, 459
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 2 cut(s) 145, 279
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 2 cut(s) 192, 265
Alw44I GTGCAC 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 1 cut(s) 205
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 439
AvaII GGWCC 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 489
BalI TGGCCA 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 111, 187
BcoDI GTCTC 2 cut(s) 192, 265
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 338, 495
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 388, 459
Bse8I GATNNNNATC 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 338, 495
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 3 cut(s) 31, 388, 459
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 1 cut(s) 79
Bsh1236I CGCG 2 cut(s) 7, 167
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 3 cut(s) 31, 388, 459
BsmAI GTCTC 2 cut(s) 192, 265
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 489
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 2 cut(s) 130, 167
BspANI GGCC 1 cut(s) 207
BspEI TCCGGA 1 cut(s) 357
BspFNI CGCG 2 cut(s) 7, 167
BspLI GGNNCC 1 cut(s) 493
BssECI CCNNGG 2 cut(s) 338, 495
BssMI GATC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 347, 410
BstDSI CCRYGG 2 cut(s) 338, 495
BstENI CCTNNNNNAGG 1 cut(s) 29
BstFNI CGCG 2 cut(s) 7, 167
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 2 cut(s) 192, 265
BstMBI GATC 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 489
BstUI CGCG 2 cut(s) 7, 167
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 2 cut(s) 338, 495
BtgZI GCGATG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 485
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 2 cut(s) 13, 401
CviAII CATG 1 cut(s) 508
CviJI RGCY 6 cut(s) 126, 173, 207, 212, 351, 473
CviKI_1 RGCY 6 cut(s) 126, 173, 207, 212, 351, 473
DdeI CTNAG 2 cut(s) 347, 410
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 1 cut(s) 511
FaqI GGGAC 1 cut(s) 433
FatI CATG 1 cut(s) 507
FauNDI CATATG 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
GlaI GCGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 358
HgaI GACGC 2 cut(s) 13, 401
HhaI GCGC 1 cut(s) 9
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 2 cut(s) 89, 361
HpaII CCGG 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 487, 505
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 4 cut(s) 86, 101, 235, 358
Hpy8I GTNNAC 2 cut(s) 487, 505
HpyAV CCTTC 2 cut(s) 262, 457
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 2 cut(s) 81, 310
HpyCH4V TGCA 3 cut(s) 266, 305, 487
HpyF3I CTNAG 2 cut(s) 347, 410
HpySE526I ACGT 2 cut(s) 81, 310
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 1 cut(s) 7
Kpn2I TCCGGA 1 cut(s) 357
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 14, 399
LpnPI CCDG 4 cut(s) 114, 291, 371, 422
Lsp1109I GCAGC 1 cut(s) 79
MaeII ACGT 2 cut(s) 81, 310
MaeIII GTNAC 2 cut(s) 86, 373
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 2 cut(s) 283, 423
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 2 cut(s) 83, 370
MnlI CCTC 8 cut(s) 25, 35, 137, 163, 382, 453, 473, 493
Mox20I TGGCCA 1 cut(s) 207
MroI TCCGGA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 207
MspI CCGG 1 cut(s) 358
MvnI CGCG 2 cut(s) 7, 167
NdeI CATATG 1 cut(s) 444
NdeII GATC 1 cut(s) 231
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 86, 373
NspI RCATGY 1 cut(s) 511
PciI ACATGT 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 83, 369
PpsI GAGTC 2 cut(s) 83, 369
PscI ACATGT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 439
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 2 cut(s) 83, 370
SduI GDGCHC 1 cut(s) 489
SetI ASST 5 cut(s) 27, 84, 254, 313, 504
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 283, 423
SsiI CCGC 2 cut(s) 130, 167
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 2 cut(s) 84, 313
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 283, 423
TseFI GTSAC 2 cut(s) 86, 373
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 2 cut(s) 86, 373
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 504
VneI GTGCAC 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 29
XceI RCATGY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.