Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0025012

Physical Location & Seq

Genomic Coordinates Reverse (-)

141311 .. 142226

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atggcgtccattcttcaagctcactctgcttcctcaaagtctgagatcggtgatcttcacgtccgtcgtgaagaaaaactgagggagttgaaggaaacactcacaaatgccggggaagatcaactgcagcaattggttttggttgatgccatgcaacgcctcggcgtcgcttatctcttccaaaatgaaatttatgcaatcttagagaagcaatacaccaggtcatcagcttataatggtgatgatgatggcaatcatcaacttcttgaggcttcccttcgttttcgactattgagacaacaaggtttccctgtaactccaggtagatattgttcttcccactttgtcttaactcaaattcaacaaggaaagttgatgataatatgtactgacataatgaggatgacagacgcagaggcgtgtaacaagatcaagaacaatgagaagctcaaatccggactaatagctagtgatgaagacataaatggattagtggaattatgtgaagcatctcacttgagtttccaaggagaagaaatgcttgacgaagcaggaaagctcagccgccagcttctcactgcctgggtctctaacaatcacaatgatcatcgcgtaacacttgtcgagcgcactttggagcatccctatcacaagagcctgacaagattcatggccaagaagtttttgaataattttcaaggccaagaaaaatgggtttgttctttacaagagctagcaaacctagagttcaacatggttgaatccataatccaaaatgaaatcctactagtatctgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

266

Amino Acids

30.31

Weight (kDa)

5.63

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0037511
rosa_multiflora	Rmu_sc0002521.1_g000039
rosa_samantha	Rh5CG289800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccII	CGCG	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	455
AciI	CCGC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	2 cut(s)	189, 357
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	1 cut(s)	388
AgsI	TTSAA	7 cut(s)	17, 91, 362, 688, 698, 751, 761
AhlI	ACTAGT	1 cut(s)	787
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	218, 319, 581
AluBI	AGCT	7 cut(s)	20, 230, 448, 467, 559, 571, 733
AluI	AGCT	7 cut(s)	20, 230, 448, 467, 559, 571, 733
Alw26I	GTCTC	2 cut(s)	289, 592
Aor13HI	TCCGGA	1 cut(s)	455
AoxI	GGCC	2 cut(s)	672, 700
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	189, 357
AspLEI	GCGC	1 cut(s)	630
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	62, 251
AsuNHI	GCTAGC	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	3 cut(s)	220, 321, 583
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	289, 592
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	4 cut(s)	468, 734, 743, 788
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	128, 565
BlpI	GCTNAGC	1 cut(s)	560
BlsI	GCNGC	2 cut(s)	129, 566
Bme1390I	CCNGG	4 cut(s)	112, 220, 321, 583
BmgBI	CACGTC	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	112, 220, 321, 583
BmsI	GCATC	3 cut(s)	136, 518, 649
BmtI	GCTAGC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	287, 538
BpuMI	CCSGG	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	4 cut(s)	111, 160, 526, 582
BsaWI	WCCGGW	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	455
BseBI	CCWGG	3 cut(s)	220, 321, 583
BseDI	CCNNGG	4 cut(s)	111, 160, 526, 582
BseGI	GGATG	2 cut(s)	408, 640
BseJI	GATNNNNATC	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	33, 71, 574
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	2 cut(s)	674, 702
BsiSI	CCGG	2 cut(s)	111, 456
BsmAI	GTCTC	2 cut(s)	289, 592
BsnI	GGCC	2 cut(s)	674, 702
Bso31I	GGTCTC	1 cut(s)	592
Bsp13I	TCCGGA	1 cut(s)	455
Bsp143I	GATC	5 cut(s)	45, 52, 118, 429, 604
Bsp1720I	GCTNAGC	1 cut(s)	560
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	2 cut(s)	674, 702
BspCNI	CTCAG	3 cut(s)	34, 72, 573
BspEI	TCCGGA	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	592
BssECI	CCNNGG	4 cut(s)	111, 160, 526, 582
BssMI	GATC	5 cut(s)	45, 52, 118, 429, 604
BssNI	GRCGYC	2 cut(s)	5, 165
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	3 cut(s)	220, 321, 583
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	5, 165
BstC8I	GCNNGC	2 cut(s)	569, 735
BstDEI	CTNAG	4 cut(s)	42, 80, 202, 560
BstF5I	GGATG	2 cut(s)	408, 640
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	5 cut(s)	48, 55, 121, 432, 607
BstMAI	GTCTC	2 cut(s)	289, 592
BstMBI	GATC	5 cut(s)	45, 52, 118, 429, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	220, 321, 583
BstSCI	CCNGG	4 cut(s)	110, 218, 319, 581
BstSFI	CTRYAG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	674, 702
BtgZI	GCGATG	1 cut(s)	593
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	408, 640
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	569, 735
CfoI	GCGC	1 cut(s)	630
CseI	GACGC	2 cut(s)	154, 419
CsiI	ACCWGGT	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	3 cut(s)	151, 670, 754
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	4 cut(s)	42, 80, 202, 560
DpnI	GATC	5 cut(s)	47, 54, 120, 431, 606
DpnII	GATC	5 cut(s)	45, 52, 118, 429, 604
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	592
EcoRII	CCWGG	3 cut(s)	218, 319, 581
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	154, 673, 757
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	3 cut(s)	150, 669, 753
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	128, 565
FokI	GGATG	2 cut(s)	415, 627
Fsp4HI	GCNGC	2 cut(s)	128, 565
FspBI	CTAG	4 cut(s)	468, 734, 743, 788
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	2 cut(s)	128, 565
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	674, 702
HapII	CCGG	2 cut(s)	111, 456
HgaI	GACGC	2 cut(s)	154, 419
HhaI	GCGC	1 cut(s)	630
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	3 cut(s)	154, 673, 757
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	666, 761
HpaII	CCGG	2 cut(s)	111, 456
HphI	GGTGA	2 cut(s)	62, 251
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	4 cut(s)	68, 266, 433, 456
Hpy99I	CGWCG	2 cut(s)	69, 170
HpyAV	CCTTC	2 cut(s)	85, 287
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	127, 154, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	42, 80, 202, 560
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	3 cut(s)	154, 673, 757
HspAI	GCGC	1 cut(s)	628
Kpn2I	TCCGGA	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	45, 52, 118, 429, 604
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	136, 518, 649
MabI	ACCWGGT	1 cut(s)	218
MaeI	CTAG	4 cut(s)	468, 734, 743, 788
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	313, 422, 613
MalI	GATC	5 cut(s)	47, 54, 120, 431, 606
MboI	GATC	5 cut(s)	45, 52, 118, 429, 604
MboII	GAAGA	8 cut(s)	5, 47, 83, 128, 169, 327, 488, 545
MfeI	CAATTG	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	5 cut(s)	131, 189, 357, 497, 691
MluNI	TGGCCA	1 cut(s)	674
MnlI	CCTC	6 cut(s)	43, 75, 170, 262, 393, 409
Mox20I	TGGCCA	1 cut(s)	674
MroI	TCCGGA	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	674
MspI	CCGG	2 cut(s)	111, 456
MspR9I	CCNGG	4 cut(s)	112, 220, 321, 583
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	3 cut(s)	220, 321, 583
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	5 cut(s)	45, 52, 118, 429, 604
NheI	GCTAGC	1 cut(s)	733
NlaIII	CATG	3 cut(s)	154, 673, 757
NmeAIII	GCCGAG	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	666, 761
PkrI	GCNGC	2 cut(s)	129, 566
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	3 cut(s)	218, 319, 581
PspGI	CCWGG	3 cut(s)	218, 319, 581
PsrI	GAACNNNNNNTAC	2 cut(s)	316, 348
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	128, 565
Sau3AI	GATC	5 cut(s)	45, 52, 118, 429, 604
ScrFI	CCNGG	4 cut(s)	112, 220, 321, 583
SexAI	ACCWGGT	1 cut(s)	218
SfaNI	GCATC	3 cut(s)	136, 518, 649
SfcI	CTRYAG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	266, 517
SmoI	CTYRAG	2 cut(s)	266, 517
SpeI	ACTAGT	1 cut(s)	787
Sse9I	AATT	5 cut(s)	131, 189, 357, 497, 691
SsiI	CCGC	1 cut(s)	565
SspMI	CTAG	4 cut(s)	468, 734, 743, 788
StyD4I	CCNGG	4 cut(s)	110, 218, 319, 581
StyI	CCWWGG	1 cut(s)	526
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	286, 624
TasI	AATT	5 cut(s)	131, 189, 357, 497, 691
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	666, 761
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	201, 489, 658, 792
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	583
XapI	RAATTY	2 cut(s)	189, 357
XspI	CTAG	4 cut(s)	468, 734, 743, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.