Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025012

Physical Location & Seq

Genomic Coordinates Forward (+)

31869052 .. 31870192

Gene Structure 1141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG289800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGTCCATTCTTCAAGCTCACTCTGCTTCCTCAAAGTCTGAGACCGGTGATCTTCACGTCCGTCGTGAAGAAAAACTGAGGGAGTTGAAGGAAACACTCGCAAATGACGGAAAAGATCAACTGCAGCAATTGGTTATGGTTGATGCCATGCAACGCCTCGGCGTCGCTTATCTCTTCCAAAATGAAATTTATGTAATCTTAGAGAAGCAATACACCAGGTCATCAGCTTATAATGGTGATGACGATGGCAATCATCAACTTCTTGAGGCTTCCCTTCGTTTTCGACTATTGAGACAACAAGGTTTCCCTGTAACTCCAGAGGCGTGTAACAAGATCAAGAACAATGAGAAGCTCAAATGCGGACTAATAGCTAGTGATGAAGACATAAAGGGATTAGTGGAATTATGTGAAGCATCTCACTTGAGTTTCCAAGGAGAAGAAATGCTTGACGAAGCAGGAAAGCTCAGCCGCCAGCTTCTCACTGCCTGGGTCTCTAACAATCACAATGATCATCGCGTAACACTTGTCGAGCGCACTTTGGAGCATCCCTATCACAAGAGCCTGACAAGATTCATGGCCAAGAAGTTTTTGAATAATTTTCAAGGCCAAGAAAAATGGGTTTGTTCTTTACAAGAGCTAGCAAACCTAGAGTTCAACATGGTTGAATCCATAATCCAAAATGAAATCCTACTAGTATCTGGATGGTGGAAAGAACTAGGTTTGACCAAAGAGTTGAAGTTTGTGAGAGACCAGCCAATTAAATGGTACACATGGCCGATGGCATGCCTCGTTGATCCACGATTATCAGAGGACAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

274

Amino Acids

31.65

Weight (kDa)

5.7

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	13 - 176	7.6e-33	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0037511
rosa_multiflora	Rmu_sc0002521.1_g000039
rosa_samantha	Rh5CG289800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccII	CGCG	1 cut(s)	519
AciI	CCGC	2 cut(s)	363, 472
AclWI	GGATC	1 cut(s)	791
AcoI	YGGCCR	2 cut(s)	579, 776
AcsI	RAATTY	1 cut(s)	189
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	1 cut(s)	770
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	7 cut(s)	17, 91, 595, 605, 658, 668, 739
AhlI	ACTAGT	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	218, 488
AluBI	AGCT	7 cut(s)	20, 230, 355, 374, 466, 478, 640
AluI	AGCT	7 cut(s)	20, 230, 355, 374, 466, 478, 640
Alw26I	GTCTC	4 cut(s)	38, 289, 499, 744
AlwI	GGATC	1 cut(s)	791
AoxI	GGCC	3 cut(s)	579, 607, 776
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	189
AsiGI	ACCGGT	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	62, 251
AsuNHI	GCTAGC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	3 cut(s)	242, 699, 775
BciT130I	CCWGG	2 cut(s)	220, 490
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	4 cut(s)	38, 289, 499, 744
BcuI	ACTAGT	1 cut(s)	694
BfaI	CTAG	5 cut(s)	375, 641, 650, 695, 719
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	128, 472
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	129, 473
Bme1390I	CCNGG	2 cut(s)	220, 490
BmgBI	CACGTC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	220, 490
BmsI	GCATC	3 cut(s)	136, 425, 556
BmtI	GCTAGC	1 cut(s)	644
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	287, 445
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaI	GGTCTC	3 cut(s)	38, 499, 744
BsaJI	CCNNGG	3 cut(s)	160, 433, 489
BsaWI	WCCGGW	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	220, 490
BseDI	CCNNGG	3 cut(s)	160, 433, 489
BseGI	GGATG	2 cut(s)	547, 710
BseJI	GATNNNNATC	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	33, 71, 481
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	581, 609, 778
BshTI	ACCGGT	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	4 cut(s)	38, 289, 499, 744
BsnI	GGCC	3 cut(s)	581, 609, 778
Bso31I	GGTCTC	3 cut(s)	38, 499, 744
Bsp143I	GATC	5 cut(s)	52, 118, 336, 511, 796
Bsp1720I	GCTNAGC	1 cut(s)	467
BspACI	CCGC	2 cut(s)	363, 472
BspANI	GGCC	3 cut(s)	581, 609, 778
BspCNI	CTCAG	3 cut(s)	34, 72, 480
BspFNI	CGCG	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	791
BspTNI	GGTCTC	3 cut(s)	38, 499, 744
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	160, 433, 489
BssMI	GATC	5 cut(s)	52, 118, 336, 511, 796
BssNI	GRCGYC	2 cut(s)	5, 165
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	220, 490
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	5, 165
BstC8I	GCNNGC	3 cut(s)	476, 642, 787
BstDEI	CTNAG	4 cut(s)	42, 80, 202, 467
BstF5I	GGATG	2 cut(s)	547, 710
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	5 cut(s)	55, 121, 339, 514, 799
BstMAI	GTCTC	4 cut(s)	38, 289, 499, 744
BstMBI	GATC	5 cut(s)	52, 118, 336, 511, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	220, 490
BstNSI	RCATGY	1 cut(s)	789
BstSCI	CCNGG	2 cut(s)	218, 488
BstSFI	CTRYAG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	581, 609, 778
BtgZI	GCGATG	1 cut(s)	500
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	547, 710
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	3 cut(s)	476, 642, 787
CfoI	GCGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	47
CseI	GACGC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	769
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	5 cut(s)	151, 577, 661, 774, 786
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	4 cut(s)	42, 80, 202, 467
DpnI	GATC	5 cut(s)	54, 120, 338, 513, 798
DpnII	GATC	5 cut(s)	52, 118, 336, 511, 796
EaeI	YGGCCR	2 cut(s)	579, 776
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	3 cut(s)	38, 499, 744
EcoRII	CCWGG	2 cut(s)	218, 488
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	5 cut(s)	154, 580, 664, 777, 789
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	5 cut(s)	150, 576, 660, 773, 785
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	128, 472
FokI	GGATG	2 cut(s)	534, 717
Fsp4HI	GCNGC	2 cut(s)	128, 472
FspBI	CTAG	5 cut(s)	375, 641, 650, 695, 719
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	2 cut(s)	128, 472
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	581, 609, 778
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	537
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	5 cut(s)	154, 580, 664, 777, 789
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	2 cut(s)	573, 668
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	62, 251
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	2 cut(s)	43, 811
Hpy188III	TCNNGA	5 cut(s)	68, 266, 320, 340, 702
Hpy8I	GTNNAC	1 cut(s)	771
Hpy99I	CGWCG	2 cut(s)	69, 170
HpyAV	CCTTC	2 cut(s)	85, 287
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	127, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	42, 80, 202, 467
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	5 cut(s)	154, 580, 664, 777, 789
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	52, 118, 336, 511, 796
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	136, 425, 556
MabI	ACCWGGT	1 cut(s)	218
MaeI	CTAG	5 cut(s)	375, 641, 650, 695, 719
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	313, 329, 520
MalI	GATC	5 cut(s)	54, 120, 338, 513, 798
MboI	GATC	5 cut(s)	52, 118, 336, 511, 796
MboII	GAAGA	6 cut(s)	5, 47, 83, 169, 395, 452
MfeI	CAATTG	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	5 cut(s)	131, 189, 404, 598, 759
MluNI	TGGCCA	1 cut(s)	581
MnlI	CCTC	7 cut(s)	43, 75, 170, 262, 316, 800, 805
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	220, 490
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	220, 490
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	5 cut(s)	52, 118, 336, 511, 796
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	5 cut(s)	154, 580, 664, 777, 789
NmeAIII	GCCGAG	1 cut(s)	141
NspI	RCATGY	1 cut(s)	789
PaeI	GCATGC	1 cut(s)	789
PfeI	GAWTC	2 cut(s)	573, 668
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	129, 473
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	218, 488
PspGI	CCWGG	2 cut(s)	218, 488
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	2 cut(s)	128, 472
Sau3AI	GATC	5 cut(s)	52, 118, 336, 511, 796
ScrFI	CCNGG	2 cut(s)	220, 490
SexAI	ACCWGGT	1 cut(s)	218
SfaNI	GCATC	3 cut(s)	136, 425, 556
SfcI	CTRYAG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	266, 424
SmoI	CTYRAG	2 cut(s)	266, 424
SpeI	ACTAGT	1 cut(s)	694
SphI	GCATGC	1 cut(s)	789
Sse9I	AATT	5 cut(s)	131, 189, 404, 598, 759
SsiI	CCGC	2 cut(s)	363, 472
SspMI	CTAG	5 cut(s)	375, 641, 650, 695, 719
StyD4I	CCNGG	2 cut(s)	218, 488
StyI	CCWWGG	1 cut(s)	433
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	286, 531
TasI	AATT	5 cut(s)	131, 189, 404, 598, 759
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	2 cut(s)	573, 668
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	201, 396, 565, 699
TspGWI	ACGGA	2 cut(s)	53, 126
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	789
XspI	CTAG	5 cut(s)	375, 641, 650, 695, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.