Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002541.1

Orthogroup ID

OG0031213

Physical Location & Seq

Genomic Coordinates Reverse (-)

187150 .. 190471

Gene Structure 3322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002541.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggctaaccaagctcccacacttcctcttctcactccttacaagttgggaaagtttgatctttctcacagagttgttttaccggcattgactagacagagatcatatggatatgttccccagccacctgccatcttatattactctcagagagcatccaaagggggtcttctcataactgaagccactggagtttctgacacagcacaagggtatccagatacccctggtatatggtcaaaggagcaagttgaactgaagcatggaaacccatcgtcaatgctgtacatgctaaagggggtgtcttcttctgtcagatttggcatgtggggagggtttcaaatagtgccagatgggcaagcaccaatctcttctactgacaagtacctaacaccccaaataggatctaatggtattgatgttatgcaattcacacctccaagacgattaaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgccatggaagctggctttgatggggttgaaattcatggcgccaatggctaccttatagatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccgatttgcactagacattgttgaagctgttgtcaatgagataggagcagataaagttggagttagattatctccatttgccgactatatggaatctggagattctaatccaaaggaattgggcctttatctagtcaattccttgaacaaatatggaatcctgtactgccacatggttgagccaagaatgaagacacttggacaaaaaattgaatgtccccagagtctcgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtggctgagggccgtgcagatcttattgcttttggtcgttggttcttggctaatccagatttgccaaagagatttgagcttaatgctcctctaaataagtacatcagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcaccgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

5.9

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031213)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002541.1_g000047
rosa_wichuraiana	Rw0G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
Acc65I	GGTACC	1 cut(s)	884
AccB1I	GGYRCC	2 cut(s)	542, 884
AciI	CCGC	1 cut(s)	1104
AclWI	GGATC	3 cut(s)	412, 619, 1055
AcsI	RAATTY	2 cut(s)	462, 534
AcuI	CTGAAG	2 cut(s)	201, 278
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	6 cut(s)	287, 386, 794, 861, 886, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	401, 1070
AgsI	TTSAA	6 cut(s)	254, 341, 533, 653, 775, 842
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	14, 515, 656, 1012
AluI	AGCT	4 cut(s)	14, 515, 656, 1012
Alw26I	GTCTC	1 cut(s)	860
AlwI	GGATC	3 cut(s)	412, 619, 1055
AoxI	GGCC	2 cut(s)	751, 943
ApeKI	GCWGC	2 cut(s)	494, 896
ApoI	RAATTY	2 cut(s)	462, 534
Asp718I	GGTACC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	751, 943
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	542, 884
BbsI	GAAGAC	3 cut(s)	161, 297, 827
BbvCI	CCTCAGC	1 cut(s)	939
BbvI	GCAGC	2 cut(s)	481, 883
BccI	CCATC	5 cut(s)	140, 280, 347, 518, 914
BceAI	ACGGC	1 cut(s)	930
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	860
BfaI	CTAG	4 cut(s)	93, 617, 641, 761
BfoI	RGCGCY	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	355
BglII	AGATCT	1 cut(s)	952
BisI	GCNGC	2 cut(s)	495, 897
BlsI	GCNGC	2 cut(s)	496, 898
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	751, 943
BmiI	GGNNCC	2 cut(s)	544, 886
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	3 cut(s)	161, 297, 827
BpmI	CTGGAG	2 cut(s)	210, 747
Bpu10I	CCTNAGC	1 cut(s)	939
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	226, 507
BsaWI	WCCGGW	1 cut(s)	1063
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 1070
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	226, 507
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	2 cut(s)	401, 1070
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	2 cut(s)	161, 930
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	1011
BseXI	GCAGC	2 cut(s)	481, 883
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	753, 945
BshNI	GGYRCC	2 cut(s)	542, 884
BsiSI	CCGG	2 cut(s)	83, 1064
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	2 cut(s)	401, 1070
BsmAI	GTCTC	1 cut(s)	860
BsmFI	GGGAC	1 cut(s)	831
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	753, 945
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	1 cut(s)	1104
BspANI	GGCC	2 cut(s)	753, 945
BspCNI	CTCAG	2 cut(s)	160, 931
BspLI	GGNNCC	2 cut(s)	544, 886
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	3 cut(s)	412, 619, 1055
BspT107I	GGYRCC	2 cut(s)	542, 884
BsrDI	GCAATG	1 cut(s)	891
BsrFI	RCCGGY	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	226, 507
BssMI	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
BssNI	GRCGYC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	228
Bst6I	CTCTTC	2 cut(s)	33, 376
BstACI	GRCGYC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	360, 517
BstDEI	CTNAG	2 cut(s)	147, 939
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	9 cut(s)	61, 104, 407, 565, 580, 592, 614, 955, 1063
BstMAI	GTCTC	1 cut(s)	860
BstMBI	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 289, 355, 503, 512, 549
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	292, 328
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	481, 883
BstV2I	GAAGAC	3 cut(s)	161, 297, 827
BstX2I	RGATCY	3 cut(s)	404, 611, 952
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	3 cut(s)	404, 611, 952
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	753, 945
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	186, 1077
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	360, 517
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	751, 943
Csp6I	GTAC	6 cut(s)	286, 385, 793, 860, 885, 1033
CviAII	CATG	7 cut(s)	263, 289, 325, 508, 539, 802, 865
CviQI	GTAC	6 cut(s)	286, 385, 793, 860, 885, 1033
DdeI	CTNAG	2 cut(s)	147, 939
DinI	GGCGCC	1 cut(s)	544
DpnI	GATC	9 cut(s)	60, 103, 406, 564, 579, 591, 613, 954, 1062
DpnII	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	33, 376
EarI	CTCTTC	2 cut(s)	33, 376
Eco130I	CCWWGG	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	201, 278
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	507
EgeI	GGCGCC	1 cut(s)	544
EheI	GGCGCC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	7 cut(s)	266, 292, 328, 511, 542, 805, 868
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	7 cut(s)	262, 288, 324, 507, 538, 801, 864
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	495, 897
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	495, 897
FspBI	CTAG	4 cut(s)	93, 617, 641, 761
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	2 cut(s)	495, 897
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	210, 747
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	753, 945
HapII	CCGG	2 cut(s)	83, 1064
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	7 cut(s)	266, 292, 328, 511, 542, 805, 868
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	4 cut(s)	722, 731, 786, 853
HpaII	CCGG	2 cut(s)	83, 1064
Hpy188I	TCNGA	6 cut(s)	150, 199, 317, 488, 1040, 1060
Hpy188III	TCNNGA	5 cut(s)	218, 617, 726, 989, 1094
HpyAV	CCTTC	1 cut(s)	898
HpyCH4V	TGCA	4 cut(s)	427, 497, 638, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 289, 355, 503, 512, 549
HpyF3I	CTNAG	2 cut(s)	147, 939
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	7 cut(s)	266, 292, 328, 511, 542, 805, 868
HspAI	GCGC	1 cut(s)	543
KasI	GGCGCC	1 cut(s)	542
KpnI	GGTACC	1 cut(s)	888
Kzo9I	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
LmnI	GCTCC	4 cut(s)	19, 244, 674, 1024
Lsp1109I	GCAGC	2 cut(s)	481, 883
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	4 cut(s)	93, 617, 641, 761
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	9 cut(s)	60, 103, 406, 564, 579, 591, 613, 954, 1062
MboI	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
MboII	GAAGA	7 cut(s)	20, 161, 297, 300, 363, 832, 929
MflI	RGATCY	3 cut(s)	404, 611, 952
MluCI	AATT	7 cut(s)	428, 462, 471, 534, 746, 766, 837
Mly113I	GGCGCC	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	6 cut(s)	36, 326, 447, 477, 934, 1032
MseI	TTAA	4 cut(s)	449, 572, 879, 1014
MspI	CCGG	2 cut(s)	83, 1064
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	11, 289, 355, 503, 512, 549
NarI	GGCGCC	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	507
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
NlaIII	CATG	7 cut(s)	266, 292, 328, 511, 542, 805, 868
NlaIV	GGNNCC	2 cut(s)	544, 886
NspI	RCATGY	2 cut(s)	292, 328
PaqCI	CACCTGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	722, 731, 786
PkrI	GCNGC	2 cut(s)	496, 898
PleI	GAGTC	1 cut(s)	861
PluTI	GGCGCC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	544, 886
PspPI	GGNCC	2 cut(s)	751, 943
PsuI	RGATCY	3 cut(s)	404, 611, 952
RsaI	GTAC	6 cut(s)	287, 386, 794, 861, 886, 1034
RsaNI	GTAC	6 cut(s)	286, 385, 793, 860, 885, 1033
SaqAI	TTAA	4 cut(s)	449, 572, 879, 1014
SatI	GCNGC	2 cut(s)	495, 897
Sau3AI	GATC	9 cut(s)	58, 101, 404, 562, 577, 589, 611, 952, 1060
Sau96I	GGNCC	2 cut(s)	751, 943
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	9 cut(s)	16, 130, 390, 439, 517, 558, 658, 890, 1014
SfaNI	GCATC	1 cut(s)	164
SfoI	GGCGCC	1 cut(s)	544
Sse9I	AATT	7 cut(s)	428, 462, 471, 534, 746, 766, 837
SsiI	CCGC	1 cut(s)	1104
SspDI	GGCGCC	1 cut(s)	542
SspMI	CTAG	4 cut(s)	93, 617, 641, 761
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	507
TaqI	TCGA	1 cut(s)	592
TasI	AATT	7 cut(s)	428, 462, 471, 534, 746, 766, 837
TatI	WGTACW	3 cut(s)	285, 792, 1032
TfiI	GAWTC	3 cut(s)	722, 731, 786
Tru1I	TTAA	4 cut(s)	449, 572, 879, 1014
Tru9I	TTAA	4 cut(s)	449, 572, 879, 1014
TscAI	CASTG	2 cut(s)	193, 1084
TseI	GCWGC	2 cut(s)	494, 896
TspDTI	ATGAA	4 cut(s)	474, 527, 833, 880
TspRI	CASTG	2 cut(s)	193, 1084
XapI	RAATTY	2 cut(s)	462, 534
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	2 cut(s)	292, 328
XspI	CTAG	4 cut(s)	93, 617, 641, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.