Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002542.1

Orthogroup ID

OG0007127

Physical Location & Seq

Genomic Coordinates Reverse (-)

49454 .. 51673

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002542.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgaggctgcagatggcaatggaggttcgggacagcctagagattgcgcacactgcggagtacttgaattttctaaaatgctacttccgggcgttctcggtgattcttctgcaaattacaacgccacagatgactgacaatccggaacacaagctccggaatatagtggtggaggttcttaatcgtctccctcacactgaagtgctccgccctttcgtccaggacctcctgaaagttgcaatgcaagtactaaccactgacaatgaggagaatggattgatatgtattcgtataatctttgacctcctcaggaacttcaggcccacgctggaaaatgaagttcagccatttttggactttgtctgcaaaatctacagcaattttgaggcaactgttaatcatttcttctttgtcaaagaagagaaaggtgcggcgcctgtggttggggaggatattaagtctatggatacttctttggatcagtcattaagtggtggtagtagttcttatactgcgggcgggaagcttaaccccagtacctgttccttcaagataattaccgagagtcccctggtggtcatgtttttgtttcagttgtatagtcgacttgtccagaccaatattcctaatctgttgcctaagatggttgctgctatatctgtccgtggtcccgaatctgttcctccgcacttgaagactcatttcactgagttgaagggtgcacaggtgaagactgtttcgtttctgacatacctgttgaagagctttgccgattatatcaggcagcatgaagaaagcatatgtaaaagcatagtcaatttgctagttacatgttcagactctgtatcaattagaaaggaattgttagtagctctaaaacatgttcttggaacagatttcaagaggggcttatttcctctgattgacacactattggaagaaagggttctggtcggaactggtcgagcctgctttgagacattgaggcctttggcatatagtctacttgcagagattgttcatcatgttcgagcggacctttccttgtcacaggtattctatctggtgtctaattcaaaatcagtctgtttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 ko05166 map04140 map04141 map04210 map04932 map05010 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase

Protein Analysis

364

Amino Acids

41.14

Weight (kDa)

6.8

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17930 AT4G36080 AT4G36080 AT4G36080
fragaria_vesca	FvH4_1g11860 FvH4_1g11860
malus_domestica	MD02G1132600.v1.1 MD15G1245900.v1.1
prunus_persica	Prupe.7G168000_v2.0.a1 Prupe.7G168000_v2.0.a1
pyrus_communis	pycom02g10410 pycom15g21620
rosa_chinensis	RchiOBHm_Chr2g0099461
rosa_laevigata	RLG00000016884
rosa_multiflora	Rmu_sc0002542.1_g000008 Rmu_sc0002542.1_g000010 Rmu_sc0002542.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143060
rosa_rugosa	Rorug02G0079700 Rorug02G0079800
rosa_samantha	Rh2AG129800 Rh2BG132900 Rh2CG133500 Rh2DG133800
rosa_wichuraiana	Rw2G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	433
AccBSI	CCGCTC	1 cut(s)	1034
AccI	GTMKAC	2 cut(s)	604, 1003
AccIII	TCCGGA	2 cut(s)	142, 156
AciI	CCGC	7 cut(s)	56, 208, 431, 515, 519, 686, 1034
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	219, 301
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	3 cut(s)	62, 249, 538
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	2 cut(s)	830, 880
AgsI	TTSAA	7 cut(s)	67, 550, 694, 715, 760, 901, 1077
AjnI	CCWGG	2 cut(s)	219, 570
AleI	CACNNNNGTG	1 cut(s)	200
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	4 cut(s)	154, 526, 765, 872
AluI	AGCT	4 cut(s)	154, 526, 765, 872
Alw21I	GWGCWC	2 cut(s)	207, 724
Alw26I	GTCTC	2 cut(s)	191, 971
Alw44I	GTGCAC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	486
AlwNI	CAGNNNCTG	2 cut(s)	540, 842
Aor13HI	TCCGGA	2 cut(s)	142, 156
AoxI	GGCC	2 cut(s)	320, 986
ApaLI	GTGCAC	1 cut(s)	720
ApeKI	GCWGC	3 cut(s)	7, 650, 784
ApoI	RAATTY	1 cut(s)	67
Asp700I	GAANNNNTTC	2 cut(s)	678, 945
AspLEI	GCGC	2 cut(s)	49, 436
AspS9I	GGNCC	4 cut(s)	223, 321, 668, 1036
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	112, 739
AvaII	GGWCC	3 cut(s)	223, 668, 1036
AxyI	CCTNAGG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	724
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	701, 737
Bbv12I	GWGCWC	2 cut(s)	207, 724
BbvI	GCAGC	2 cut(s)	637, 796
BccI	CCATC	2 cut(s)	7, 637
BciT130I	CCWGG	2 cut(s)	221, 572
BciVI	GTATCC	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	191, 971
BfaI	CTAG	2 cut(s)	38, 824
BfmI	CTRYAG	2 cut(s)	8, 373
BfoI	RGCGCY	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	4 cut(s)	8, 432, 651, 785
BlsI	GCNGC	4 cut(s)	9, 433, 652, 786
BmcAI	AGTACT	2 cut(s)	62, 249
Bme1390I	CCNGG	3 cut(s)	89, 221, 572
Bme18I	GGWCC	3 cut(s)	223, 668, 1036
BmgT120I	GGNCC	4 cut(s)	223, 321, 668, 1036
BmiI	GGNNCC	2 cut(s)	435, 670
BmrFI	CCNGG	3 cut(s)	89, 221, 572
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	2 cut(s)	701, 737
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	570, 664
BsaWI	WCCGGW	2 cut(s)	142, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	534, 964
Bse21I	CCTNAGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	24, 246
BseAI	TCCGGA	2 cut(s)	142, 156
BseBI	CCWGG	2 cut(s)	221, 572
BseDI	CCNNGG	2 cut(s)	570, 664
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	2 cut(s)	24, 246
BseMII	CTCAG	2 cut(s)	322, 699
BseNI	ACTGG	2 cut(s)	534, 964
BseRI	GAGGAG	2 cut(s)	281, 296
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	637, 796
BshFI	GGCC	2 cut(s)	322, 988
BshNI	GGYRCC	1 cut(s)	433
BsiHKAI	GWGCWC	2 cut(s)	207, 724
BsiSI	CCGG	3 cut(s)	88, 143, 157
BslFI	GGGAC	3 cut(s)	44, 552, 654
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	191, 971
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	3 cut(s)	44, 552, 654
BsnI	GGCC	2 cut(s)	322, 988
Bsp1286I	GDGCHC	2 cut(s)	207, 724
Bsp13I	TCCGGA	2 cut(s)	142, 156
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	7 cut(s)	56, 208, 431, 515, 519, 686, 1034
BspANI	GGCC	2 cut(s)	322, 988
BspCNI	CTCAG	2 cut(s)	321, 700
BspEI	TCCGGA	2 cut(s)	142, 156
BspLI	GGNNCC	2 cut(s)	435, 670
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	433
BsrBI	CCGCTC	1 cut(s)	1034
BsrDI	GCAATG	2 cut(s)	24, 246
BsrI	ACTGG	2 cut(s)	534, 964
BssECI	CCNNGG	2 cut(s)	570, 664
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	221, 572
Bst4CI	ACNGT	2 cut(s)	394, 736
Bst6I	CTCTTC	2 cut(s)	414, 755
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	517, 970
BstDEI	CTNAG	3 cut(s)	308, 639, 708
BstDSI	CCRYGG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	49, 436
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	191, 971
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	221, 572
BstNSI	RCATGY	2 cut(s)	834, 884
BstSCI	CCNGG	3 cut(s)	87, 219, 570
BstSFI	CTRYAG	2 cut(s)	8, 373
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	637, 796
BstV2I	GAAGAC	2 cut(s)	701, 737
Bsu36I	CCTNAGG	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	322, 988
BtgI	CCRYGG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	4 cut(s)	51, 195, 255, 705
Cac8I	GCNNGC	2 cut(s)	517, 970
CaiI	CAGNNNCTG	2 cut(s)	540, 842
CfoI	GCGC	2 cut(s)	49, 436
Cfr13I	GGNCC	4 cut(s)	223, 321, 668, 1036
Csp6I	GTAC	3 cut(s)	61, 248, 537
CviAII	CATG	5 cut(s)	580, 788, 831, 881, 1025
CviQI	GTAC	3 cut(s)	61, 248, 537
DdeI	CTNAG	3 cut(s)	308, 639, 708
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	414, 755
EarI	CTCTTC	2 cut(s)	414, 755
EciI	GGCGGA	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	988
Eco47I	GGWCC	3 cut(s)	223, 668, 1036
Eco57I	CTGAAG	2 cut(s)	219, 301
Eco81I	CCTNAGG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	219, 570
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	5 cut(s)	583, 791, 834, 884, 1028
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	3 cut(s)	44, 552, 654
FatI	CATG	5 cut(s)	579, 787, 830, 880, 1024
FauI	CCCGC	2 cut(s)	508, 512
FauNDI	CATATG	1 cut(s)	800
FblI	GTMKAC	2 cut(s)	604, 1003
Fnu4HI	GCNGC	4 cut(s)	8, 432, 651, 785
Fsp4HI	GCNGC	4 cut(s)	8, 432, 651, 785
FspBI	CTAG	2 cut(s)	38, 824
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	2 cut(s)	48, 435
GluI	GCNGC	4 cut(s)	8, 432, 651, 785
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	322, 988
HapII	CCGG	3 cut(s)	88, 143, 157
HhaI	GCGC	2 cut(s)	49, 436
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	5 cut(s)	583, 791, 834, 884, 1028
Hin6I	GCGC	2 cut(s)	47, 434
HinP1I	GCGC	2 cut(s)	47, 434
HincII	GTYRAC	1 cut(s)	605
HindII	GTYRAC	1 cut(s)	605
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	5 cut(s)	103, 565, 674, 697, 839
HpaII	CCGG	3 cut(s)	88, 143, 157
HphI	GGTGA	2 cut(s)	112, 739
Hpy166II	GTNNAC	3 cut(s)	605, 722, 1004
Hpy188I	TCNGA	4 cut(s)	747, 838, 921, 956
Hpy188III	TCNNGA	9 cut(s)	29, 143, 157, 229, 310, 550, 613, 671, 901
Hpy8I	GTNNAC	3 cut(s)	605, 722, 1004
HpyAV	CCTTC	2 cut(s)	556, 709
HpyCH4III	ACNGT	2 cut(s)	394, 736
HpyCH4V	TGCA	7 cut(s)	10, 112, 239, 244, 366, 722, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	308, 639, 708
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	5 cut(s)	583, 791, 834, 884, 1028
HspAI	GCGC	2 cut(s)	47, 434
KasI	GGCGCC	1 cut(s)	433
Kpn2I	TCCGGA	2 cut(s)	142, 156
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	2 cut(s)	159, 210
Lsp1109I	GCAGC	2 cut(s)	637, 796
MaeI	CTAG	2 cut(s)	38, 824
MaeIII	GTNAC	2 cut(s)	826, 1047
MalI	GATC	1 cut(s)	480
MbiI	CCGCTC	1 cut(s)	1034
MboI	GATC	1 cut(s)	478
MboII	GAAGA	8 cut(s)	98, 397, 431, 706, 742, 772, 803, 950
MhlI	GDGCHC	2 cut(s)	207, 724
MluCI	AATT	8 cut(s)	67, 114, 379, 555, 817, 849, 860, 1072
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	3 cut(s)	574, 691, 833
MmeI	TCCRAC	1 cut(s)	934
MroI	TCCGGA	2 cut(s)	142, 156
MroXI	GAANNNNTTC	2 cut(s)	678, 945
MseI	TTAA	5 cut(s)	180, 396, 456, 488, 528
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	3 cut(s)	88, 143, 157
MspR9I	CCNGG	3 cut(s)	89, 221, 572
MvaI	CCWGG	2 cut(s)	221, 572
MwoI	GCNNNNNNNGC	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	89
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	5 cut(s)	583, 791, 834, 884, 1028
NlaIV	GGNNCC	2 cut(s)	435, 670
NmuCI	GTSAC	1 cut(s)	1047
NsbI	TGCGCA	1 cut(s)	48
NspI	RCATGY	2 cut(s)	834, 884
OliI	CACNNNNGTG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	988
PciI	ACATGT	2 cut(s)	830, 880
PciSI	GCTCTTC	1 cut(s)	755
PdmI	GAANNNNTTC	2 cut(s)	678, 945
PfeI	GAWTC	2 cut(s)	103, 674
PflFI	GACNNNGTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	4 cut(s)	9, 433, 652, 786
PleI	GAGTC	3 cut(s)	573, 691, 833
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	3 cut(s)	573, 691, 833
PpuMI	RGGWCCY	1 cut(s)	223
PscI	ACATGT	2 cut(s)	830, 880
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	219, 570
PspGI	CCWGG	2 cut(s)	219, 570
PspN4I	GGNNCC	2 cut(s)	435, 670
PspPI	GGNCC	4 cut(s)	223, 321, 668, 1036
PspPPI	RGGWCCY	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	12
PstNI	CAGNNNCTG	2 cut(s)	540, 842
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	3 cut(s)	62, 249, 538
RsaNI	GTAC	3 cut(s)	61, 248, 537
RseI	CAYNNNNRTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	603
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	5 cut(s)	180, 396, 456, 488, 528
SatI	GCNGC	4 cut(s)	8, 432, 651, 785
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	4 cut(s)	223, 321, 668, 1036
ScaI	AGTACT	2 cut(s)	62, 249
SchI	GAGTC	3 cut(s)	574, 691, 833
ScrFI	CCNGG	3 cut(s)	89, 221, 572
SduI	GDGCHC	2 cut(s)	207, 724
SfcI	CTRYAG	2 cut(s)	8, 373
SfoI	GGCGCC	1 cut(s)	435
SinI	GGWCC	3 cut(s)	223, 668, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	8 cut(s)	67, 114, 379, 555, 817, 849, 860, 1072
SseBI	AGGCCT	1 cut(s)	988
SsiI	CCGC	7 cut(s)	56, 208, 431, 515, 519, 686, 1034
SspDI	GGCGCC	1 cut(s)	433
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	38, 824
StuI	AGGCCT	1 cut(s)	988
StyD4I	CCNGG	3 cut(s)	87, 219, 570
TaaI	ACNGT	2 cut(s)	394, 736
TaqI	TCGA	3 cut(s)	604, 964, 1030
TasI	AATT	8 cut(s)	67, 114, 379, 555, 817, 849, 860, 1072
TatI	WGTACW	2 cut(s)	60, 247
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	103, 674
Tru1I	TTAA	5 cut(s)	180, 396, 456, 488, 528
Tru9I	TTAA	5 cut(s)	180, 396, 456, 488, 528
TscAI	CASTG	4 cut(s)	58, 202, 262, 712
TseFI	GTSAC	1 cut(s)	1047
TseI	GCWGC	3 cut(s)	7, 650, 784
Tsp45I	GTSAC	1 cut(s)	1047
TspDTI	ATGAA	3 cut(s)	351, 804, 1010
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	4 cut(s)	58, 202, 262, 712
Tth111I	GACNNNGTC	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	720
VpaK11BI	GGWCC	3 cut(s)	223, 668, 1036
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	2 cut(s)	834, 884
XmiI	GTMKAC	2 cut(s)	604, 1003
XmnI	GAANNNNTTC	2 cut(s)	678, 945
XspI	CTAG	2 cut(s)	38, 824
ZrmI	AGTACT	2 cut(s)	62, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.