Rorug02G0079700

Belongs to the PI3 PI4-kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007127
Physical Location & Seq
Forward (+)
6458746 .. 6461289
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0079700.1

Sequence Viewer

Length: 606 bp
ATGTCGCTCAAACCTTCTATTGCTGATGAGAACTCTAAGATGGTGGTGTACTTGTCTATTCTCAATTTTCCAACAGCTCCTCTAGTTCACTTTTGGACTAAATGGCAAGTTTATGAAACTCTGCTGATTTCATTAACCAGCAGTGCTCTTGAGATTAAGTATCACTCTCCTGAAGAGGAAATAGCCTTTGGTCCTGCTTGTTGGTTATGGGACTATTTAAGAAGAAGTGGAGCTTCTGGGTTTCTGCTACCCCTTTCTGGTGGAGCAGATAGCTCGTCTGTGGCTGCCATAGTTGGCTGCATGTGTCAGCTTGTGGTAAAAGTAACTAGGTTTTACTGCAGCTCCGAATCGACAAAATCACGGGCAAAGGTTCTAGCAGATGAAATTGGCGCATGGCATCTTGATATCAGTATAGATGGTGTTATTTCTGCACTTCTGACGCTGTTTCAAGCAGTGACAGGAAAACGACCACGATATAAGATAGCTGGAGGATCTAATGCTGAGAACTTAGTTCCAATGTGGATGAAGGATCGGAAAGGGTATACCCAACAACAACTTGACGAGGTCCGCATTGAAGTAGCCGACTACTTACAGACTCTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04141 ko04210 ko04932 ko05010 ko05166 map04140 map04141 map04210 map04932 map05010 map05166
Pfam Domains
Protein Families
FAT FATC PI3_PI4_kinase

Protein Analysis

201

Amino Acids

22.34

Weight (kDa)

6.3

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_synthase PF02540 68 - 151 2e-06 NAD synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 542
AciI CCGC 1 cut(s) 568
AclWI GGATC 2 cut(s) 499, 537
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 449, 575
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 6 cut(s) 77, 233, 273, 310, 342, 485
AluI AGCT 6 cut(s) 77, 233, 273, 310, 342, 485
Alw21I GWGCWC 1 cut(s) 148
AlwI GGATC 2 cut(s) 499, 537
AlwNI CAGNNNCTG 1 cut(s) 598
ApeKI GCWGC 3 cut(s) 284, 297, 339
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 191, 565
AvaII GGWCC 2 cut(s) 191, 565
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 271, 284, 351
BccI CCATC 2 cut(s) 34, 410
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BfaI CTAG 3 cut(s) 83, 327, 374
BfmI CTRYAG 2 cut(s) 337, 602
BisI GCNGC 3 cut(s) 285, 298, 340
BlsI GCNGC 3 cut(s) 286, 299, 341
Bme18I GGWCC 2 cut(s) 191, 565
BmgT120I GGNCC 2 cut(s) 191, 565
BmsI GCATC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 271, 284, 351
BsgI GTGCAG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 491, 529
BspACI CCGC 1 cut(s) 568
BspCNI CTCAG 1 cut(s) 493
BspMAI CTGCAG 1 cut(s) 341
BspPI GGATC 2 cut(s) 499, 537
BssMI GATC 2 cut(s) 491, 529
BssNAI GTATAC 1 cut(s) 543
Bst1107I GTATAC 1 cut(s) 543
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 36, 501, 508
BstF5I GGATG 1 cut(s) 528
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 2 cut(s) 494, 532
BstMBI GATC 2 cut(s) 491, 529
BstNSI RCATGY 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 337, 602
BstV1I GCAGC 3 cut(s) 271, 284, 351
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BstZ17I GTATAC 1 cut(s) 543
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 2 cut(s) 148, 459
BtsIMutI CAGTG 2 cut(s) 148, 459
CaiI CAGNNNCTG 1 cut(s) 598
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 191, 565
CseI GACGC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 301, 393
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 36, 501, 508
DpnI GATC 2 cut(s) 493, 531
DpnII GATC 2 cut(s) 491, 529
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 191, 565
Eco57I CTGAAG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 406
FaeI CATG 2 cut(s) 304, 396
FaiI YATR 8 cut(s) 114, 208, 290, 302, 394, 413, 477, 543
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 300, 392
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 3 cut(s) 285, 298, 340
FokI GGATG 1 cut(s) 535
Fsp4HI GCNGC 3 cut(s) 285, 298, 340
FspBI CTAG 3 cut(s) 83, 327, 374
GlaI GCGC 1 cut(s) 391
GluI GCNGC 3 cut(s) 285, 298, 340
GsuI CTGGAG 1 cut(s) 507
HgaI GACGC 1 cut(s) 448
HhaI GCGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 304, 396
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HinfI GANTC 2 cut(s) 347, 595
Hpy166II GTNNAC 3 cut(s) 49, 88, 543
Hpy188I TCNGA 3 cut(s) 346, 438, 534
Hpy188III TCNNGA 3 cut(s) 149, 170, 401
Hpy8I GTNNAC 3 cut(s) 49, 88, 543
HpyAV CCTTC 2 cut(s) 24, 520
HpyCH4V TGCA 3 cut(s) 300, 339, 431
HpyF3I CTNAG 3 cut(s) 36, 501, 508
Hsp92II CATG 2 cut(s) 304, 396
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 491, 529
LmnI GCTCC 4 cut(s) 82, 230, 263, 347
LpnPI CCDG 7 cut(s) 151, 183, 207, 222, 243, 444, 471
Lsp1109I GCAGC 3 cut(s) 271, 284, 351
LweI GCATC 1 cut(s) 406
MaeI CTAG 3 cut(s) 83, 327, 374
MaeIII GTNAC 2 cut(s) 322, 454
MalI GATC 2 cut(s) 493, 531
MboI GATC 2 cut(s) 491, 529
MboII GAAGA 2 cut(s) 185, 234
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 64, 384
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 4 cut(s) 90, 169, 482, 556
MseI TTAA 3 cut(s) 134, 156, 218
NdeII GATC 2 cut(s) 491, 529
NlaIII CATG 2 cut(s) 304, 396
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 1 cut(s) 304
PfeI GAWTC 1 cut(s) 347
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 3 cut(s) 286, 299, 341
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PspPI GGNCC 2 cut(s) 191, 565
PstI CTGCAG 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 3 cut(s) 134, 156, 218
SatI GCNGC 3 cut(s) 285, 298, 340
Sau3AI GATC 2 cut(s) 491, 529
Sau96I GGNCC 2 cut(s) 191, 565
SchI GAGTC 1 cut(s) 589
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 2 cut(s) 337, 602
SinI GGWCC 2 cut(s) 191, 565
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 64, 384
SsiI CCGC 1 cut(s) 568
SspMI CTAG 3 cut(s) 83, 327, 374
TaqI TCGA 1 cut(s) 350
TasI AATT 2 cut(s) 64, 384
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 134, 156, 218
Tru9I TTAA 3 cut(s) 134, 156, 218
TscAI CASTG 2 cut(s) 148, 459
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 284, 297, 339
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 4 cut(s) 120, 129, 396, 539
TspRI CASTG 2 cut(s) 148, 459
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 191, 565
XceI RCATGY 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 542
XspI CTAG 3 cut(s) 83, 327, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.