Rmu_sc0002542.1_g000010

Belongs to the PI3 PI4-kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002542.1
OG0007127
Physical Location & Seq
Reverse (-)
49454 .. 51673
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
atgaggctgcagatggcaatggaggttcgggacagcctagagattgcgcacactgcggagtacttgaattttctaaaatgctacttccgggcgttctcggtgattcttctgcaaattacaacgccacagatgactgacaatccggaacacaagctccggaatatagtggtggaggttcttaatcgtctccctcacactgaagtgctccgccctttcgtccaggacctcctgaaagttgcaatgcaagtactaaccactgacaatgaggagaatggattgatatgtattcgtataatctttgacctcctcaggaacttcaggcccacgctggaaaatgaagttcagccatttttggactttgtctgcaaaatctacagcaattttgaggcaactgttaatcatttcttctttgtcaaagaagagaaaggtgcggcgcctgtggttggggaggatattaagtctatggatacttctttggatcagtcattaagtggtggtagtagttcttatactgcgggcgggaagcttaaccccagtacctgttccttcaagataattaccgagagtcccctggtggtcatgtttttgtttcagttgtatagtcgacttgtccagaccaatattcctaatctgttgcctaagatggttgctgctatatctgtccgtggtcccgaatctgttcctccgcacttgaagactcatttcactgagttgaagggtgcacaggtgaagactgtttcgtttctgacatacctgttgaagagctttgccgattatatcaggcagcatgaagaaagcatatgtaaaagcatagtcaatttgctagttacatgttcagactctgtatcaattagaaaggaattgttagtagctctaaaacatgttcttggaacagatttcaagaggggcttatttcctctgattgacacactattggaagaaagggttctggtcggaactggtcgagcctgctttgagacattgaggcctttggcatatagtctacttgcagagattgttcatcatgttcgagcggacctttccttgtcacaggtattctatctggtgtctaattcaaaatcagtctgtttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04141 ko04210 ko04932 ko05010 ko05166 map04140 map04141 map04210 map04932 map05010 map05166
Pfam Domains
Protein Families
FAT FATC PI3_PI4_kinase

Protein Analysis

364

Amino Acids

41.14

Weight (kDa)

6.8

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tra1_central PF20175 235 - 356 2.7e-42 Tra1 HEAT repeat central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 1034
AccI GTMKAC 2 cut(s) 604, 1003
AccIII TCCGGA 2 cut(s) 142, 156
AciI CCGC 7 cut(s) 56, 208, 431, 515, 519, 686, 1034
AclWI GGATC 1 cut(s) 486
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 2 cut(s) 219, 301
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 3 cut(s) 62, 249, 538
AfiI CCNNNNNNNGG 1 cut(s) 443
AflIII ACRYGT 2 cut(s) 830, 880
AgsI TTSAA 7 cut(s) 67, 550, 694, 715, 760, 901, 1077
AjnI CCWGG 2 cut(s) 219, 570
AleI CACNNNNGTG 1 cut(s) 200
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 4 cut(s) 154, 526, 765, 872
AluI AGCT 4 cut(s) 154, 526, 765, 872
Alw21I GWGCWC 2 cut(s) 207, 724
Alw26I GTCTC 2 cut(s) 191, 971
Alw44I GTGCAC 1 cut(s) 720
AlwI GGATC 1 cut(s) 486
AlwNI CAGNNNCTG 2 cut(s) 540, 842
Aor13HI TCCGGA 2 cut(s) 142, 156
AoxI GGCC 2 cut(s) 320, 986
ApaLI GTGCAC 1 cut(s) 720
ApeKI GCWGC 3 cut(s) 7, 650, 784
ApoI RAATTY 1 cut(s) 67
Asp700I GAANNNNTTC 2 cut(s) 678, 945
AspLEI GCGC 2 cut(s) 49, 436
AspS9I GGNCC 4 cut(s) 223, 321, 668, 1036
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 112, 739
AvaII GGWCC 3 cut(s) 223, 668, 1036
AxyI CCTNAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 724
BaeI ACNNNNGTAYC 2 cut(s) 520, 553
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 701, 737
Bbv12I GWGCWC 2 cut(s) 207, 724
BbvI GCAGC 2 cut(s) 637, 796
BccI CCATC 2 cut(s) 7, 637
BciT130I CCWGG 2 cut(s) 221, 572
BciVI GTATCC 1 cut(s) 460
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 191, 971
BfaI CTAG 2 cut(s) 38, 824
BfmI CTRYAG 2 cut(s) 8, 373
BfoI RGCGCY 1 cut(s) 437
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 4 cut(s) 8, 432, 651, 785
BlsI GCNGC 4 cut(s) 9, 433, 652, 786
BmcAI AGTACT 2 cut(s) 62, 249
Bme1390I CCNGG 3 cut(s) 89, 221, 572
Bme18I GGWCC 3 cut(s) 223, 668, 1036
BmgT120I GGNCC 4 cut(s) 223, 321, 668, 1036
BmiI GGNNCC 2 cut(s) 435, 670
BmrFI CCNGG 3 cut(s) 89, 221, 572
BmrI ACTGGG 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 528
BpiI GAAGAC 2 cut(s) 701, 737
BpuMI CCSGG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 570, 664
BsaWI WCCGGW 2 cut(s) 142, 156
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 534, 964
Bse21I CCTNAGG 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 24, 246
BseAI TCCGGA 2 cut(s) 142, 156
BseBI CCWGG 2 cut(s) 221, 572
BseDI CCNNGG 2 cut(s) 570, 664
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 2 cut(s) 24, 246
BseMII CTCAG 2 cut(s) 322, 699
BseNI ACTGG 2 cut(s) 534, 964
BseRI GAGGAG 2 cut(s) 281, 296
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 2 cut(s) 637, 796
BshFI GGCC 2 cut(s) 322, 988
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 2 cut(s) 207, 724
BsiSI CCGG 3 cut(s) 88, 143, 157
BslFI GGGAC 3 cut(s) 44, 552, 654
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 191, 971
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 3 cut(s) 44, 552, 654
BsnI GGCC 2 cut(s) 322, 988
Bsp1286I GDGCHC 2 cut(s) 207, 724
Bsp13I TCCGGA 2 cut(s) 142, 156
Bsp143I GATC 1 cut(s) 478
BspACI CCGC 7 cut(s) 56, 208, 431, 515, 519, 686, 1034
BspANI GGCC 2 cut(s) 322, 988
BspCNI CTCAG 2 cut(s) 321, 700
BspEI TCCGGA 2 cut(s) 142, 156
BspLI GGNNCC 2 cut(s) 435, 670
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 1 cut(s) 486
BspQI GCTCTTC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 1034
BsrDI GCAATG 2 cut(s) 24, 246
BsrI ACTGG 2 cut(s) 534, 964
BssECI CCNNGG 2 cut(s) 570, 664
BssMI GATC 1 cut(s) 478
BssNI GRCGYC 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 221, 572
Bst4CI ACNGT 2 cut(s) 394, 736
Bst6I CTCTTC 2 cut(s) 414, 755
BstACI GRCGYC 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 517, 970
BstDEI CTNAG 3 cut(s) 308, 639, 708
BstDSI CCRYGG 1 cut(s) 664
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 2 cut(s) 49, 436
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 2 cut(s) 191, 971
BstMBI GATC 1 cut(s) 478
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 221, 572
BstNSI RCATGY 2 cut(s) 834, 884
BstSCI CCNGG 3 cut(s) 87, 219, 570
BstSFI CTRYAG 2 cut(s) 8, 373
BstSLI GKGCMC 1 cut(s) 724
BstV1I GCAGC 2 cut(s) 637, 796
BstV2I GAAGAC 2 cut(s) 701, 737
Bsu36I CCTNAGG 1 cut(s) 308
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 2 cut(s) 322, 988
BtgI CCRYGG 1 cut(s) 664
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 4 cut(s) 51, 195, 255, 705
Cac8I GCNNGC 2 cut(s) 517, 970
CaiI CAGNNNCTG 2 cut(s) 540, 842
CfoI GCGC 2 cut(s) 49, 436
Cfr13I GGNCC 4 cut(s) 223, 321, 668, 1036
Csp6I GTAC 3 cut(s) 61, 248, 537
CviAII CATG 5 cut(s) 580, 788, 831, 881, 1025
CviQI GTAC 3 cut(s) 61, 248, 537
DdeI CTNAG 3 cut(s) 308, 639, 708
DinI GGCGCC 1 cut(s) 435
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 414, 755
EarI CTCTTC 2 cut(s) 414, 755
EciI GGCGGA 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 988
Eco47I GGWCC 3 cut(s) 223, 668, 1036
Eco57I CTGAAG 2 cut(s) 219, 301
Eco81I CCTNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 219, 570
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 5 cut(s) 583, 791, 834, 884, 1028
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 3 cut(s) 44, 552, 654
FatI CATG 5 cut(s) 579, 787, 830, 880, 1024
FauI CCCGC 2 cut(s) 508, 512
FauNDI CATATG 1 cut(s) 800
FblI GTMKAC 2 cut(s) 604, 1003
Fnu4HI GCNGC 4 cut(s) 8, 432, 651, 785
Fsp4HI GCNGC 4 cut(s) 8, 432, 651, 785
FspBI CTAG 2 cut(s) 38, 824
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 2 cut(s) 48, 435
GluI GCNGC 4 cut(s) 8, 432, 651, 785
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 2 cut(s) 322, 988
HapII CCGG 3 cut(s) 88, 143, 157
HhaI GCGC 2 cut(s) 49, 436
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 5 cut(s) 583, 791, 834, 884, 1028
Hin6I GCGC 2 cut(s) 47, 434
HinP1I GCGC 2 cut(s) 47, 434
HincII GTYRAC 1 cut(s) 605
HindII GTYRAC 1 cut(s) 605
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 103, 565, 674, 697, 839
HpaII CCGG 3 cut(s) 88, 143, 157
HphI GGTGA 2 cut(s) 112, 739
Hpy166II GTNNAC 3 cut(s) 605, 722, 1004
Hpy188I TCNGA 4 cut(s) 747, 838, 921, 956
Hpy188III TCNNGA 9 cut(s) 29, 143, 157, 229, 310, 550, 613, 671, 901
Hpy8I GTNNAC 3 cut(s) 605, 722, 1004
HpyAV CCTTC 2 cut(s) 556, 709
HpyCH4III ACNGT 2 cut(s) 394, 736
HpyCH4V TGCA 7 cut(s) 10, 112, 239, 244, 366, 722, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 308, 639, 708
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 5 cut(s) 583, 791, 834, 884, 1028
HspAI GCGC 2 cut(s) 47, 434
KasI GGCGCC 1 cut(s) 433
Kpn2I TCCGGA 2 cut(s) 142, 156
Kzo9I GATC 1 cut(s) 478
LguI GCTCTTC 1 cut(s) 755
LmnI GCTCC 2 cut(s) 159, 210
Lsp1109I GCAGC 2 cut(s) 637, 796
MaeI CTAG 2 cut(s) 38, 824
MaeIII GTNAC 2 cut(s) 826, 1047
MalI GATC 1 cut(s) 480
MbiI CCGCTC 1 cut(s) 1034
MboI GATC 1 cut(s) 478
MboII GAAGA 8 cut(s) 98, 397, 431, 706, 742, 772, 803, 950
MhlI GDGCHC 2 cut(s) 207, 724
MluCI AATT 8 cut(s) 67, 114, 379, 555, 817, 849, 860, 1072
Mly113I GGCGCC 1 cut(s) 434
MlyI GAGTC 3 cut(s) 574, 691, 833
MmeI TCCRAC 1 cut(s) 934
MroI TCCGGA 2 cut(s) 142, 156
MroXI GAANNNNTTC 2 cut(s) 678, 945
MseI TTAA 5 cut(s) 180, 396, 456, 488, 528
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 3 cut(s) 88, 143, 157
MspR9I CCNGG 3 cut(s) 89, 221, 572
MvaI CCWGG 2 cut(s) 221, 572
MwoI GCNNNNNNNGC 1 cut(s) 53
NarI GGCGCC 1 cut(s) 434
NciI CCSGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 800
NdeII GATC 1 cut(s) 478
NlaIII CATG 5 cut(s) 583, 791, 834, 884, 1028
NlaIV GGNNCC 2 cut(s) 435, 670
NmuCI GTSAC 1 cut(s) 1047
NsbI TGCGCA 1 cut(s) 48
NspI RCATGY 2 cut(s) 834, 884
OliI CACNNNNGTG 1 cut(s) 200
PceI AGGCCT 1 cut(s) 988
PciI ACATGT 2 cut(s) 830, 880
PciSI GCTCTTC 1 cut(s) 755
PdmI GAANNNNTTC 2 cut(s) 678, 945
PfeI GAWTC 2 cut(s) 103, 674
PflFI GACNNNGTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 4 cut(s) 9, 433, 652, 786
PleI GAGTC 3 cut(s) 573, 691, 833
PluTI GGCGCC 1 cut(s) 437
PpsI GAGTC 3 cut(s) 573, 691, 833
PpuMI RGGWCCY 1 cut(s) 223
PscI ACATGT 2 cut(s) 830, 880
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 219, 570
PspGI CCWGG 2 cut(s) 219, 570
PspN4I GGNNCC 2 cut(s) 435, 670
PspPI GGNCC 4 cut(s) 223, 321, 668, 1036
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 2 cut(s) 540, 842
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 3 cut(s) 62, 249, 538
RsaNI GTAC 3 cut(s) 61, 248, 537
RseI CAYNNNNRTG 1 cut(s) 200
SalI GTCGAC 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 755
SaqAI TTAA 5 cut(s) 180, 396, 456, 488, 528
SatI GCNGC 4 cut(s) 8, 432, 651, 785
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 4 cut(s) 223, 321, 668, 1036
ScaI AGTACT 2 cut(s) 62, 249
SchI GAGTC 3 cut(s) 574, 691, 833
ScrFI CCNGG 3 cut(s) 89, 221, 572
SduI GDGCHC 2 cut(s) 207, 724
SfcI CTRYAG 2 cut(s) 8, 373
SfoI GGCGCC 1 cut(s) 435
SinI GGWCC 3 cut(s) 223, 668, 1036
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 8 cut(s) 67, 114, 379, 555, 817, 849, 860, 1072
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 7 cut(s) 56, 208, 431, 515, 519, 686, 1034
SspDI GGCGCC 1 cut(s) 433
SspI AATATT 1 cut(s) 622
SspMI CTAG 2 cut(s) 38, 824
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 3 cut(s) 87, 219, 570
TaaI ACNGT 2 cut(s) 394, 736
TaqI TCGA 3 cut(s) 604, 964, 1030
TasI AATT 8 cut(s) 67, 114, 379, 555, 817, 849, 860, 1072
TatI WGTACW 2 cut(s) 60, 247
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 2 cut(s) 103, 674
Tru1I TTAA 5 cut(s) 180, 396, 456, 488, 528
Tru9I TTAA 5 cut(s) 180, 396, 456, 488, 528
TscAI CASTG 4 cut(s) 58, 202, 262, 712
TseFI GTSAC 1 cut(s) 1047
TseI GCWGC 3 cut(s) 7, 650, 784
Tsp45I GTSAC 1 cut(s) 1047
TspDTI ATGAA 3 cut(s) 351, 804, 1010
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 4 cut(s) 58, 202, 262, 712
Tth111I GACNNNGTC 1 cut(s) 359
VneI GTGCAC 1 cut(s) 720
VpaK11BI GGWCC 3 cut(s) 223, 668, 1036
XapI RAATTY 1 cut(s) 67
XceI RCATGY 2 cut(s) 834, 884
XmiI GTMKAC 2 cut(s) 604, 1003
XmnI GAANNNNTTC 2 cut(s) 678, 945
XspI CTAG 2 cut(s) 38, 824
ZrmI AGTACT 2 cut(s) 62, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.