Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002556.1

Orthogroup ID

OG0031214

Physical Location & Seq

Genomic Coordinates Reverse (-)

10355 .. 11092

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002556.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgatctgcgccacctcttgttctaagcctaagatctcatttcaacgtttcaggttttttgaaatggtgaattcggggacttggctttcggttttgaggttatgtgctcttctccttttcttggaggccaaggtttttgttttgggttgtgatgatagtaatgtccagggtggtaatagtatagatgggtctggtggagtatcagagatttgtgttaatgatctggctagtttcatgccaccaccatatggtaattcatctgatatagtctgcaggcctatttggaacacttttgtttttaggccggaaaaggccattcaagaattaagcaatactatttgcgggttcaaagtttcttcacgagttataccagacaaagctgaattaccatatataccatttttgaagtgtggagatgcagatcatcaatggcaagagagaggagattcattggagatgacagtagcgttagagggcttaagtgttttggaagcgggggtagccacagcggaacaaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

173

Amino Acids

18.89

Weight (kDa)

4.77

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031214)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002556.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	3 cut(s)	342, 494, 509
AclI	AACGTT	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	70
AfiI	CCNNNNNNNGG	2 cut(s)	121, 248
AflII	CTTAAG	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	44, 62, 320, 349, 406
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw21I	GWGCWC	1 cut(s)	109
AoxI	GGCC	4 cut(s)	126, 275, 302, 312
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	79
BauI	CACGAG	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	478
BglII	AGATCT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	129, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 248
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	129, 166
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	121, 248
BseRI	GAGGAG	1 cut(s)	456
BshFI	GGCC	4 cut(s)	128, 277, 304, 314
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	121, 248
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	128, 277, 304, 314
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	3, 33, 220, 421
BspACI	CCGC	3 cut(s)	342, 494, 509
BspANI	GGCC	4 cut(s)	128, 277, 304, 314
BspMAI	CTGCAG	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	129, 166
BssMI	GATC	4 cut(s)	3, 33, 220, 421
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	24, 30
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	4 cut(s)	6, 36, 223, 424
BstMBI	GATC	4 cut(s)	3, 33, 220, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	4 cut(s)	128, 277, 304, 314
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	11
CviAII	CATG	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	24, 30
DpnI	GATC	4 cut(s)	5, 35, 222, 423
DpnII	GATC	4 cut(s)	3, 33, 220, 421
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	234
FauI	CCCGC	2 cut(s)	335, 487
FauNDI	CATATG	1 cut(s)	247
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	10
HaeIII	GGCC	4 cut(s)	128, 277, 304, 314
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	205, 262
Hpy188III	TCNNGA	2 cut(s)	320, 360
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	273, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	24, 30
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	3, 33, 220, 421
LguI	GCTCTTC	1 cut(s)	114
LpnPI	CCDG	8 cut(s)	37, 152, 177, 179, 209, 259, 318, 384
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	46
MalI	GATC	4 cut(s)	5, 35, 222, 423
MboI	GATC	4 cut(s)	3, 33, 220, 421
MboII	GAAGA	2 cut(s)	101, 348
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	4 cut(s)	70, 253, 323, 383
MnlI	CCTC	5 cut(s)	25, 90, 118, 434, 466
MseI	TTAA	3 cut(s)	216, 326, 479
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	478
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	4 cut(s)	3, 33, 220, 421
NlaIII	CATG	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	216, 326, 479
Sau3AI	GATC	4 cut(s)	3, 33, 220, 421
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	6 cut(s)	17, 49, 56, 101, 135, 382
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	4 cut(s)	70, 253, 323, 383
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	342, 494, 509
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	49
TasI	AATT	4 cut(s)	70, 253, 323, 383
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	3 cut(s)	216, 326, 479
Tru9I	TTAA	3 cut(s)	216, 326, 479
TspDTI	ATGAA	3 cut(s)	223, 246, 438
Van91I	CCANNNNNTGG	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.