Rroxscaffold_4G00296990

Possible catecholamine-binding domain present in a variety of eukaryotic proteins.

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
16984520 .. 16986042
1523 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00296990.1

Sequence Viewer

Length: 204 bp
ATGGTGAATTCGGGGACTTGGCTTTTGGTTTTGAGGTTATGTGCTCTTCTCCTTTTCTTGGAGGCCAAGGTTTTTGTTTTGGGTGGTGATGATAGAAATGTCCAGGGTGGTAATGGTATAGATGGGTCTGGTGGAGTATCAGAGATTTGTGTAATGATCTGGCTAGTTTCATGCCACCACCATATGGTAATTCATCTGATATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.26

Weight (kDa)

5.98

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031214)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002556.1_g000002
rosa_roxburghii Rroxscaffold_4G00296990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AcsI RAATTY 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 58, 184
AjnI CCWGG 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 46
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AsuHPI GGTGA 2 cut(s) 16, 98
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 104
BfaI CTAG 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 66, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 184
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 66, 103
BseLI CCNNNNNNNGG 2 cut(s) 58, 184
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 46
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 58, 184
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 66, 103
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 51
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 65
CviAII CATG 1 cut(s) 171
CviJI RGCY 3 cut(s) 22, 65, 163
CviKI_1 RGCY 3 cut(s) 22, 65, 163
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 174
FaiI YATR 6 cut(s) 40, 119, 172, 183, 185, 202
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 170
FauNDI CATATG 1 cut(s) 183
FspBI CTAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 1 cut(s) 174
HphI GGTGA 2 cut(s) 16, 98
Hpy188I TCNGA 2 cut(s) 142, 198
Hsp92II CATG 1 cut(s) 174
Kzo9I GATC 1 cut(s) 156
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 89, 114, 116, 145
MaeI CTAG 1 cut(s) 164
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 2 cut(s) 7, 189
MnlI CCTC 2 cut(s) 27, 55
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
NdeI CATATG 1 cut(s) 183
NdeII GATC 1 cut(s) 156
NlaIII CATG 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 46
SetI ASST 2 cut(s) 38, 72
Sse9I AATT 2 cut(s) 7, 189
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 66
TasI AATT 2 cut(s) 7, 189
TspDTI ATGAA 2 cut(s) 159, 182
Van91I CCANNNNNTGG 1 cut(s) 184
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.